BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0009.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4620 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   184   6e-47
mll2289 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   105   7e-23
AGpA732 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   100   2e-21
mlr1925 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...    99   4e-21
SSO2637 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...    99   4e-21

>PA4620 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Pae Pseudomonas aeruginosa
          Length = 179

 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 112/165 (67%), Gaps = 6/165 (3%)

Query: 4   LNLTINGQKHGPIEVRDDLSMNDFLREMLGMTGTKFGCGAAQCLSCAVIIDNPDGTSYTT 63
           L +T+NGQ  GP+EV +DL M D+L E   +TG++ GCG   C +C VI+DNPDGTS   
Sbjct: 6   LQMTLNGQAVGPVEVAEDLPMIDYLHEYQNLTGSRLGCGQGICHACVVIVDNPDGTSEEV 65

Query: 64  PTCVVPAANFDGKAIRTVEGHA-RDG-----ELSALQRAFIDHFAFQCGYCTAGFLNEGQ 117
            TC+  A  FDGK +RT+EGHA RD      EL+ +Q+ F+D FAFQC YC  GF+N   
Sbjct: 66  RTCITGAHYFDGKKVRTIEGHAQRDENGDIRELNPIQQKFVDQFAFQCSYCAPGFVNAAT 125

Query: 118 VLLERLAKTPVARDELESVIADALDGHLCRCTGYIKYHQAVRDVI 162
           VL+E+  + P+ R ELE  I D+L  H+CRCTGY++Y+ A RDV+
Sbjct: 126 VLVEKAQRQPIKRSELEQAIEDSLGHHICRCTGYVRYYSATRDVL 170


>mll2289 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Mlo Mesorhizobium loti
          Length = 158

 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 16/159 (10%)

Query: 4   LNLTINGQKHGPIE--VRDDLSMNDFLREMLGMTGTKFGCGAAQCLSCAVIIDNPDGTSY 61
           ++ TING     IE   + D ++ D LR+ LG+TG K GCG   C +C++I+D+      
Sbjct: 6   VSTTINGDN---IEYLCQPDETLLDVLRDRLGLTGAKEGCGTGDCGACSIILDD-----R 57

Query: 62  TTPTCVVPAANFDGKAIRTVEGHARDGELSALQRAFIDHFAFQCGYCTAGFLNEGQVLLE 121
              +C+V  A  +G+ I TVEG A   +L  LQ+ F++H A QCG CT GFL   + L  
Sbjct: 58  LVCSCLVLGAEAEGRRIETVEGMAHGDQLHTLQQKFLEHAALQCGICTPGFLIAAKDL-- 115

Query: 122 RLAKTPVARDELESVIADALDGHLCRCTGYIKYHQAVRD 160
            LAK P   D  E  I   L G+LCRCTGY K  +AV+D
Sbjct: 116 -LAKNP---DPTEEEIRFGLAGNLCRCTGYDKIVRAVQD 150


>AGpA732 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 177

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 24/174 (13%)

Query: 4   LNLTINGQKHGPIEVRDDL--SMNDFLREMLGMTGTKFGCGAAQCLSCAVIIDNPDGTSY 61
           +  TING     +EV  D+  S+ D +R  LG TGTK GC    C +C V++D     S 
Sbjct: 1   MQFTINGT---AVEVEADIRTSLLDLMRNYLGFTGTKKGCDQGACGACTVLVDGERINS- 56

Query: 62  TTPTCVVPAANFDGKAIRTVEGHARDGELSALQRAFIDHFAFQCGYCTAGFL-------- 113
               C+  A  + G++I TVEG A +G L  LQ+AFI+H  FQCGYCT G L        
Sbjct: 57  ----CLALAVQYQGRSITTVEGLAANGNLHPLQKAFIEHDGFQCGYCTPGQLCSAIGMAG 112

Query: 114 ----NEGQVLLERLAKTPVARDELESVIADALDGHLCRCTGYIKYHQAVRDVIL 163
               N   V+   L+   +  D+ E  I + + G+LCRC  Y    +A+ D ++
Sbjct: 113 EIERNIPSVVTADLSSNSITVDDTE--IRERMSGNLCRCGAYNGIVEAISDTLV 164


>mlr1925 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Mlo Mesorhizobium loti
          Length = 157

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 4   LNLTINGQKHGPIEVRDDLSMNDFLREMLGMTGTKFGCGAAQCLSCAVIIDNPDGTSYTT 63
           ++L INGQ H  +++   +++ D LRE LG+TGTK GC   QC +C V ID         
Sbjct: 6   VHLDINGQHH-ELQLEPRVTLLDALRERLGLTGTKKGCDHGQCGACTVHIDGE-----RV 59

Query: 64  PTCVVPAANFDGKAIRTVEGHARDGELSALQRAFIDHFAFQCGYCTAGFLNEGQVLLERL 123
             C+  AA  +G+AI T+EG AR+GEL  +Q AF++  AFQCGYCT G +      +   
Sbjct: 60  LACLTLAAQAEGRAITTIEGLAREGELHPVQAAFLEQDAFQCGYCTPGQIMSAVACIR-- 117

Query: 124 AKTPVARDELESVIADALDGHLCRCTGYIKYHQAVRD 160
            +     DE    I + + G+LCRC  Y     AVR 
Sbjct: 118 -EGHAGSDE---EIREYMAGNLCRCGAYPHIVAAVRQ 150


>SSO2637 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sso Sulfolobus solfataricus
          Length = 163

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 11/135 (8%)

Query: 26  DFLREMLGMTGTKFGCGAAQCLSCAVIIDNPDGTSYTTPTCVVPAANFDGKAIRTVEGHA 85
           DFLRE LG+TGTK GC    C +C V+++       +  +C + A   DG  I T+EG +
Sbjct: 33  DFLREELGLTGTKIGCDTTTCGACTVLLNGK-----SVKSCTLFAVQADGAEITTIEGLS 87

Query: 86  RDGELSALQRAFIDHFAFQCGYCTAGFLNEGQVLLERLAKTPVARDELESVIADALDGHL 145
            D +L  +Q AF ++FA QCG+CT G + +   LL+   + P   +  E  + D L G++
Sbjct: 88  VDSKLHPIQEAFKENFALQCGFCTPGMIMQAYFLLK---ENP---NPSEEEVRDGLHGNI 141

Query: 146 CRCTGYIKYHQAVRD 160
           CRCTGY    +AV D
Sbjct: 142 CRCTGYQNIVKAVLD 156