BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0020.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4856 [J] COG1514 2'-5' RNA ligase Atu Agrobacterium tumefacie...   205   5e-53
SMc03835 [J] COG1514 2'-5' RNA ligase Sme Sinorhizobium meliloti      195   4e-50
BMEI1862 [J] COG1514 2'-5' RNA ligase Bme Brucella melitensis         188   6e-48
mlr4348 [J] COG1514 2'-5' RNA ligase Mlo Mesorhizobium loti           186   3e-47
CC3661 Non COG                                                        121   7e-28

>AGc4856 [J] COG1514 2'-5' RNA ligase Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 212

 Score =  205 bits (521), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 124/176 (70%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFT LEIP     +LS LRGGLPGARWID ENYH+TLRFIGDIDG  A+E+   L R
Sbjct: 16  MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDR 75

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           + R  F++ L G+ SFG +KP ++ A V PS  +  LQAE+ER+ QR+GL P+ RKF PH
Sbjct: 76  IERPEFQLNLTGIGSFGSKKPHSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPH 135

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYAL 176
           VTLARL  +   DV  YLS RG F +  F   RFVL SS+ S GGGPYVVE+++ L
Sbjct: 136 VTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSKESVGGGPYVVEEAFPL 191


>SMc03835 [J] COG1514 2'-5' RNA ligase Sme Sinorhizobium meliloti
          Length = 195

 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 122/176 (69%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFT LEIP     +LS LRGGLPGARWID ENYH+TLRFIGD+D   A+EI   L R
Sbjct: 1   MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           + R  F+++L G  +FG +KP +V A V  +  +  LQAE+ER+ QR+GL  + RKFTPH
Sbjct: 61  IERPEFQLQLSGTGAFGSKKPHSVWAGVSIAPEMFALQAEIERICQRIGLPSDPRKFTPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYAL 176
           VTLARL  +  +DV +YLS RG F +  F   RFVL SSR S GGGPY+ E+ + L
Sbjct: 121 VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPL 176


>BMEI1862 [J] COG1514 2'-5' RNA ligase Bme Brucella melitensis
          Length = 196

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/178 (57%), Positives = 127/178 (71%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFT LEIP +   +LS LRGGLPGARWID ENYH+TLRFIGD++G  A+EIA+ L R
Sbjct: 1   MPRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHMADEIANALDR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           V R  F + L G+ +FG +KP ++ A V PS  L  LQAE+ER+ QR+ L  + RKFTPH
Sbjct: 61  VRRPEFMLNLSGVDAFGSKKPHSIYAGVSPSPGLNTLQAEIERICQRLRLPADPRKFTPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALCA 178
           VTLARL +A  +DV  YLS R  F +  F   RFVL SSR S GGGPY+VE+++ L A
Sbjct: 121 VTLARLKNARIEDVVHYLSGRANFATLPFKVGRFVLMSSRDSVGGGPYIVEEAWPLMA 178


>mlr4348 [J] COG1514 2'-5' RNA ligase Mlo Mesorhizobium loti
          Length = 198

 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 126/177 (71%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFT LEIP +   +LS LRGGLPGARWID ENYH+TLRFIGD++G  A+EIA+ L R
Sbjct: 1   MPRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHLTLRFIGDVEGHVADEIANALDR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           V+R  F + L G+ +FG +KP AV A    S  L  LQ E+ER+ QR+G+  + RKF PH
Sbjct: 61  VHRPSFSLTLSGVGAFGQKKPHAVWAGASASPDLAALQGEIERICQRLGIPADPRKFMPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALC 177
           VTLARL ++S  DVA YLS RG F +  F   RFVL SSR S GGGPY+VE+++ L 
Sbjct: 121 VTLARLRNSSPLDVAQYLSARGNFSTLPFRIGRFVLMSSRDSVGGGPYIVEEAWPLS 177


>CC3661 Non COG
          Length = 179

 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           M RLFT + IP +IGQ L   +GG+ GARW   E +H+TLRF+GD+    A ++   L +
Sbjct: 1   MIRLFTAIAIPPQIGQGLLPRQGGIEGARWRPLEAFHITLRFVGDVAEDLAADLDEALAQ 60

Query: 61  VNRKPFEVKLQGLSSFG-GRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTP 119
           +    F+++L     FG G    AV A V+ S PL +LQ   ER  +  GL PE R +TP
Sbjct: 61  ITAPAFDLELASAGHFGEGADIHAVWAGVDESAPLRQLQKSHERAARTAGLKPESRLYTP 120

Query: 120 HVTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYAL 176
           HVTLA L   S  +V  +L       S +F  DRF L+SS  +  G  Y +E  Y L
Sbjct: 121 HVTLAYLKRPSVPEVGAWLQANNLLRSPSFRVDRFGLYSSWQTREGSAYRLEREYLL 177