BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0011.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4870 [O] COG2386 ABC-type transport system involved in cytoch...   167   8e-42
SMc03848 [O] COG2386 ABC-type transport system involved in cytoc...   159   3e-39
mll4332 [O] COG2386 ABC-type transport system involved in cytoch...   147   8e-36
BMEI1852 [O] COG2386 ABC-type transport system involved in cytoc...   137   7e-33
STM3818 [O] COG2386 ABC-type transport system involved in cytoch...   105   3e-23

>AGc4870 [O] COG2386 ABC-type transport system involved in cytochrome c
           biogenesis, permease component Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 219

 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 93/155 (60%), Positives = 118/155 (76%)

Query: 9   DRLFTADHEDGSLDLIVMSRTPLELACAAKALAHWIAAGLPLIVATPVLGLLLNLDGTAT 68
           DRLF A+ +DGSLDLI+M  TPL L    K LAHW+  GLPL++A+P+LGL +N+D  A 
Sbjct: 65  DRLFQAERDDGSLDLILMQETPLVLTVFVKCLAHWVGTGLPLVLASPLLGLFMNMDEVAI 124

Query: 69  LAVAATLLAGTPALTFTGMIGAALAVTLHRGGLLLAVLVLPLSIPVLIFGVAASQAAISG 128
            AV  TLL G+PA+TF G +GAA+AV L RGGLL+++LVLPL+IPVLIFGV+AS AA+  
Sbjct: 125 GAVMLTLLVGSPAITFIGAVGAAVAVALPRGGLLVSILVLPLAIPVLIFGVSASYAAVQD 184

Query: 129 PLPFGTPFSILCALSLASLVIGPFAAAASLRHGLD 163
           P PF  PF ILCA++L S V GPF AA +LR+ +D
Sbjct: 185 PAPFMPPFFILCAITLFSAVTGPFFAALALRNVMD 219


>SMc03848 [O] COG2386 ABC-type transport system involved in cytochrome c
           biogenesis, permease component Sme Sinorhizobium
           meliloti
          Length = 219

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 115/155 (74%)

Query: 9   DRLFTADHEDGSLDLIVMSRTPLELACAAKALAHWIAAGLPLIVATPVLGLLLNLDGTAT 68
           DRLF A+ EDGSLDLI+M  TPL LA   K  AHW A GLPL++A+P LGL +N+D  A 
Sbjct: 65  DRLFQAEREDGSLDLIMMQETPLLLAVLVKCAAHWTATGLPLVIASPFLGLFMNMDEGAI 124

Query: 69  LAVAATLLAGTPALTFTGMIGAALAVTLHRGGLLLAVLVLPLSIPVLIFGVAASQAAISG 128
            A   TLLAGTPA+TF G +GAA+AV L RGGLL+++LVLPL+IPVLIFGV+A  AAI  
Sbjct: 125 GATMVTLLAGTPAITFIGAVGAAVAVALPRGGLLVSILVLPLAIPVLIFGVSAVYAAIED 184

Query: 129 PLPFGTPFSILCALSLASLVIGPFAAAASLRHGLD 163
           P PF  PF IL A++L   VIGP AAAA+LRH  D
Sbjct: 185 PAPFLPPFMILMAITLFFAVIGPVAAAAALRHSAD 219


>mll4332 [O] COG2386 ABC-type transport system involved in cytochrome c
           biogenesis, permease component Mlo Mesorhizobium loti
          Length = 221

 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 112/157 (71%), Gaps = 2/157 (1%)

Query: 9   DRLFTADHEDGSLDLIVM--SRTPLELACAAKALAHWIAAGLPLIVATPVLGLLLNLDGT 66
           DRLF AD EDGSLDL+V+   R  L L    K LAHW  + LPL+VA P+LGL +N++  
Sbjct: 65  DRLFQADREDGSLDLLVLGNDRHMLALTVLVKCLAHWAGSVLPLVVAAPLLGLFMNMEPL 124

Query: 67  ATLAVAATLLAGTPALTFTGMIGAALAVTLHRGGLLLAVLVLPLSIPVLIFGVAASQAAI 126
           A  A A TLL GTPA+TF G  GAA+AV L RGGLL++VLVLPL+IPVLIFGV+AS  A 
Sbjct: 125 AIGATALTLLVGTPAITFIGAAGAAVAVALPRGGLLISVLVLPLTIPVLIFGVSASYGAT 184

Query: 127 SGPLPFGTPFSILCALSLASLVIGPFAAAASLRHGLD 163
           + P PF  PF IL AL+L   V+GP +AA +LRHG D
Sbjct: 185 ANPDPFLQPFLILAALTLFLAVLGPVSAALALRHGTD 221


>BMEI1852 [O] COG2386 ABC-type transport system involved in cytochrome c
           biogenesis, permease component Bme Brucella melitensis
          Length = 221

 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 111/157 (70%), Gaps = 2/157 (1%)

Query: 9   DRLFTADHEDGSLDLIVM--SRTPLELACAAKALAHWIAAGLPLIVATPVLGLLLNLDGT 66
           DRLF AD EDGSLDL+++   R  L      K  AHW+A+ LPL+VA+P+LGL +N+D T
Sbjct: 65  DRLFQADREDGSLDLLLIGADRHMLAFTVFVKCAAHWVASVLPLVVASPMLGLFMNMDAT 124

Query: 67  ATLAVAATLLAGTPALTFTGMIGAALAVTLHRGGLLLAVLVLPLSIPVLIFGVAASQAAI 126
           A  A A TLL GTPA+ F G +GAALAV L RGGLL++V+VLPL+IPVLIFGV+AS  A 
Sbjct: 125 AIGATALTLLVGTPAIAFIGAVGAALAVALPRGGLLVSVIVLPLTIPVLIFGVSASYGAT 184

Query: 127 SGPLPFGTPFSILCALSLASLVIGPFAAAASLRHGLD 163
               PF   F IL AL+L   V+GP AA+A+L++  D
Sbjct: 185 DAVAPFFASFLILAALTLFFAVLGPLAASAALKNSAD 221


>STM3818 [O] COG2386 ABC-type transport system involved in cytochrome c
           biogenesis, permease component Sty Salmonella
           typhimurium LT2
          Length = 219

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 93/151 (61%), Gaps = 1/151 (0%)

Query: 9   DRLFTADHEDGSLDLIVMSRTPLELACAAKALAHWIAAGLPLIVATPVLGLLLNLDGTAT 68
           +RLF  D +DGSL+ +++   PL     AK LAHW   GLPLI+ +P++ LLL +D    
Sbjct: 66  ERLFRDDLQDGSLEQLMLLPVPLPAVVLAKVLAHWAVTGLPLIMLSPLVALLLGMDVYGW 125

Query: 69  LAVAATLLAGTPALTFTGMIGAALAVTLHRGGLLLAVLVLPLSIPVLIFGVAASQAAISG 128
             +A TLL GTPAL F    G AL   L RGG+LL +LVLPLS+PVLIF  AA+  A S 
Sbjct: 126 KIMALTLLLGTPALGFLAAPGVALTAGLRRGGVLLGILVLPLSVPVLIF-AAAAMDAASM 184

Query: 129 PLPFGTPFSILCALSLASLVIGPFAAAASLR 159
            LP     ++L AL   S  + PFA AA+LR
Sbjct: 185 HLPADGYLAVLGALLAGSATLSPFATAAALR 215