BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0038.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll4168 [U] COG0811 Biopolymer transport proteins Mlo Mesorhizob... 218 1e-56 AGc264 [U] COG0811 Biopolymer transport proteins Atu Agrobacteri... 214 1e-55 BMEI0365 [U] COG0811 Biopolymer transport proteins Bme Brucella ... 211 9e-55 SMc02085 [U] COG0811 Biopolymer transport proteins Sme Sinorhizo... 208 8e-54 STM3159 [U] COG0811 Biopolymer transport proteins Sty Salmonella... 199 4e-51 >mll4168 [U] COG0811 Biopolymer transport proteins Mlo Mesorhizobium loti Length = 249 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/213 (56%), Positives = 157/213 (73%), Gaps = 5/213 (2%) Query: 1 MFLNADIIVKAVMLGLAFASLVTWTVFIAKMVELTVAQRKLRGALAKIAESRSLAEAQFA 60 MF+ ADIIVKAVM+GLAFASLVTWT+++AK +E+ + ++R A+ I ++ +L +A A Sbjct: 25 MFIAADIIVKAVMIGLAFASLVTWTIWLAKSLEILGGKLRIRRAVRAIGDAATLKQASRA 84 Query: 61 LGAKGSVLSSFIAAAMREGRLSAG----ISSDSGIKERAASSFAEIVRAEARKIRIGMGL 116 LG G + + AA E LSAG + D G+KER S + I A +R++ G G+ Sbjct: 85 LGRSGGPGALLVKAAEEETALSAGALDHVGGD-GLKERVTSRLSRIEAAASRRMSRGTGV 143 Query: 117 LATIGATSPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAIPAV 176 LATIG+T+PFVGLFGTVWGIMN+FIGIS++QTTNLAVVAPGIAEALLATA+GLVAAIPAV Sbjct: 144 LATIGSTAPFVGLFGTVWGIMNAFIGISQAQTTNLAVVAPGIAEALLATAMGLVAAIPAV 203 Query: 177 IIYNHFSRVTKVYLELVNRASGAAGRLLSRDLD 209 +IYN F+R Y +++ AS RL+SRDLD Sbjct: 204 VIYNVFARSIAGYRQILADASAGVERLVSRDLD 236 >AGc264 [U] COG0811 Biopolymer transport proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 340 Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 119/212 (56%), Positives = 149/212 (70%), Gaps = 3/212 (1%) Query: 1 MFLNADIIVKAVMLGLAFASLVTWTVFIAKMVELTVAQRKLRGALAKIAESRSLAEAQFA 60 MF+ AD +VK VM+GLAFASLVTWTV++AK +EL A+ + L I +++LAEA A Sbjct: 110 MFMAADWVVKGVMIGLAFASLVTWTVWVAKSIELAGARVRAGSTLKVIRRAKTLAEATDA 169 Query: 61 LGAKGSVLSSFIAAAMREGRLSAGI---SSDSGIKERAASSFAEIVRAEARKIRIGMGLL 117 + KG + + A E +LS + + GIKER +S+ + I R++ G G L Sbjct: 170 VENKGGPAALMLRMATHEMQLSDAVVEHTDGGGIKERVSSALSRIETHAGRRMSRGTGAL 229 Query: 118 ATIGATSPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAIPAVI 177 ATIG+T+PFVGLFGTVWGIMNSFI IS+SQTTNLAVVAPGIAEALLATAIGLVAAIPAV+ Sbjct: 230 ATIGSTAPFVGLFGTVWGIMNSFISISESQTTNLAVVAPGIAEALLATAIGLVAAIPAVV 289 Query: 178 IYNHFSRVTKVYLELVNRASGAAGRLLSRDLD 209 IYN F+R Y L+ A+ RL+SRDLD Sbjct: 290 IYNVFARSITGYRHLLADAAAGVERLVSRDLD 321 >BMEI0365 [U] COG0811 Biopolymer transport proteins Bme Brucella melitensis Length = 290 Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 127/218 (58%), Positives = 154/218 (70%), Gaps = 6/218 (2%) Query: 1 MFLNADIIVKAVMLGLAFASLVTWTVFIAKMVELTVAQRKLRGALAKIAESRSLAEAQFA 60 MF+ AD +VKAVM+GLA ASL TWTV++AK +EL A+R+ AL I S +L +A A Sbjct: 64 MFMAADWVVKAVMIGLAIASLATWTVWVAKSLELAGARRRANKALKIIGHSATLNDAVHA 123 Query: 61 L-GAKGSVLSSFIAAAMREGRLSAGI---SSDSGIKERAASSFAEIVRAEARKIRIGMGL 116 L GAKG ++F+ AA E RLS + G+KER AS + I R++ G G+ Sbjct: 124 LDGAKGPG-AAFVRAAEDEVRLSGPALARAGGEGLKERVASRLSRIEAKAGRRLAKGTGI 182 Query: 117 LATIGATSPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAIPAV 176 LATIG+ +PFVGLFGTVWGIMNSFI IS++QTTNLAVVAPGIAEALLATAIGLVAAIPAV Sbjct: 183 LATIGSVAPFVGLFGTVWGIMNSFINISEAQTTNLAVVAPGIAEALLATAIGLVAAIPAV 242 Query: 177 IIYNHFSRVTKVYLELVNRASGAAGRLLSRDLD-RTHG 213 +IYN F+R Y L+ AS RL+SRDLD RT G Sbjct: 243 VIYNVFARSITGYRALLADASAGVERLVSRDLDFRTAG 280 >SMc02085 [U] COG0811 Biopolymer transport proteins Sme Sinorhizobium meliloti Length = 328 Score = 208 bits (530), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 113/212 (53%), Positives = 147/212 (69%), Gaps = 3/212 (1%) Query: 1 MFLNADIIVKAVMLGLAFASLVTWTVFIAKMVELTVAQRKLRGALAKIAESRSLAEAQFA 60 MFL ADI+VKAVM+ LA AS+ TW +F+ K +EL A+ +L+ A+A + + LAE Q Sbjct: 91 MFLAADIVVKAVMVALALASVATWAIFLVKTLELIYAKSRLKRAVAALVSANGLAEVQSK 150 Query: 61 LGAKGSVLSSFIAAAMREGRLSAGI---SSDSGIKERAASSFAEIVRAEARKIRIGMGLL 117 L + V +AAA+ E S + + G+KER +S I +++ G G+L Sbjct: 151 LERRAGVAGEMVAAAIDEMTRSEAVLDLAPAVGVKERVSSLLTRIEVRAGKRMSAGTGIL 210 Query: 118 ATIGATSPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAIPAVI 177 A+IG+ PFVGLFGTVWGIMNSFIGISK+QTTNLA+VAPGIAEALLATAIGLVAAIPAV+ Sbjct: 211 ASIGSVGPFVGLFGTVWGIMNSFIGISKAQTTNLAIVAPGIAEALLATAIGLVAAIPAVV 270 Query: 178 IYNHFSRVTKVYLELVNRASGAAGRLLSRDLD 209 IYN+F+R Y ++ A+ A RL+SRDLD Sbjct: 271 IYNYFARSVGGYKLILADAAAAVERLVSRDLD 302 >STM3159 [U] COG0811 Biopolymer transport proteins Sty Salmonella typhimurium LT2 Length = 244 Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 114/211 (54%), Positives = 139/211 (65%), Gaps = 2/211 (0%) Query: 1 MFLNADIIVKAVMLGLAFASLVTWTVFIAKMVELTVAQRKLRGALAKIAESRSLAEA-QF 59 M+ +ADI+VK VM+GL AS+VTW +F +K VE +R+L+ ++A++RSL +A Sbjct: 15 MYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADARSLDQASDI 74 Query: 60 ALGAKGSVLSS-FIAAAMREGRLSAGISSDSGIKERAASSFAEIVRAEARKIRIGMGLLA 118 A G LS+ I A E LS G + GIKER V A R + G G LA Sbjct: 75 AAGFSAKSLSAQLINEAQNELELSQGSEDNEGIKERTGFRLERRVAAVGRYMGRGNGYLA 134 Query: 119 TIGATSPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAIPAVII 178 TIGA SPFVGLFGTVWGIMNSFIGI+++QTTNLAVVAPGIAEALLATAIGLVAAIPAV+I Sbjct: 135 TIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVI 194 Query: 179 YNHFSRVTKVYLELVNRASGAAGRLLSRDLD 209 YN F+R Y + + L SRDLD Sbjct: 195 YNIFARQIGSYKATLGDVAAQVLLLQSRDLD 225