BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0037.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc265 [U] COG0848 Biopolymer transport protein Atu Agrobacteriu...   147   8e-36
SMc02084 [U] COG0848 Biopolymer transport protein Sme Sinorhizob...   146   2e-35
mll4167 [U] COG0848 Biopolymer transport protein Mlo Mesorhizobi...   145   4e-35
YPO0683 [U] COG0848 Biopolymer transport protein Ype Yersinia pe...   144   9e-35
STM3158 [U] COG0848 Biopolymer transport protein Sty Salmonella ...   140   1e-33

>AGc265 [U] COG0848 Biopolymer transport protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 167

 Score =  147 bits (371), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 1   MAVSISENDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQK 60
           MA  I EN GDD  +E+HEINVTPFIDVMLVLLIIFMVAAPL+TVD+ +DLP S+A P +
Sbjct: 1   MAGGIRENSGDD-LSENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPASTAKPAE 59

Query: 61  KPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGV 120
           +P++P YL++K DL+L +G +AV R  L  ++D      +D  +FLRAD+ V YG  M +
Sbjct: 60  RPEEPLYLTVKDDLSLNLGNDAVAREALAAAIDRQTGGKKDTRIFLRADKAVDYGHFMEI 119

Query: 121 MELLRAGGYTHVKLVALEGVPGAPAAAQADPAKP 154
           M LLR  GY  + LV LE        A +  A+P
Sbjct: 120 MNLLRDAGYLKIALVGLENAAAVSQPAGSTTAQP 153


>SMc02084 [U] COG0848 Biopolymer transport protein Sme Sinorhizobium meliloti
          Length = 141

 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 96/141 (68%), Gaps = 2/141 (1%)

Query: 1   MAVSISENDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQK 60
           MA  ISE+ GD D  E+ EINVTPFIDVMLVLLIIFMVAAPL+TVD+ +DLP S A P  
Sbjct: 1   MAGRISESSGDLD--ENSEINVTPFIDVMLVLLIIFMVAAPLATVDMKVDLPQSVAKPTP 58

Query: 61  KPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGV 120
           + DKP ++++K DLTLAIG     R   V  L+ I   + +  V LRADR+V YGELM V
Sbjct: 59  RDDKPVFVTLKADLTLAIGNEEAPREAFVAELNRITGGNTETRVLLRADRLVDYGELMTV 118

Query: 121 MELLRAGGYTHVKLVALEGVP 141
           M L++  GY  + LV LE  P
Sbjct: 119 MNLIQNAGYGKIALVGLEAAP 139


>mll4167 [U] COG0848 Biopolymer transport protein Mlo Mesorhizobium loti
          Length = 155

 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 92/128 (71%)

Query: 11  DDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQKKPDKPTYLSI 70
           DDD  ESHEINVTPFIDV+LVLLIIFMVAAPL+TVD+ +DLP S+ATP  +P+ P +L++
Sbjct: 10  DDDLEESHEINVTPFIDVILVLLIIFMVAAPLATVDVNVDLPGSTATPAPQPETPLFLTL 69

Query: 71  KPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGVMELLRAGGYT 130
           K DLTLAIG + V R  +   LD+     +   +FLRAD+ V YG+LM  M LLR  GY 
Sbjct: 70  KDDLTLAIGNDTVPRPAVAAVLDSRTRGDKQTRIFLRADKAVAYGDLMEAMNLLRGAGYL 129

Query: 131 HVKLVALE 138
            + LV LE
Sbjct: 130 KIALVGLE 137


>YPO0683 [U] COG0848 Biopolymer transport protein Ype Yersinia pestis
          Length = 143

 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 95/137 (69%), Gaps = 1/137 (0%)

Query: 8   NDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQKKPDKPTY 67
           ND  D+  E HEINVTPFIDVMLVLLIIFMVAAPL+TVD+ +DLP SSA PQ +P+KP +
Sbjct: 6   NDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVF 65

Query: 68  LSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGVMELLRAG 127
           L++K D  L +G+  V R  L  +LD +   +++  +F +AD++V Y  LM VM+ LR  
Sbjct: 66  LTVKADNQLYVGDQPVDRETLATALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKS 125

Query: 128 GYTHVKLVALE-GVPGA 143
           GY  V LV +E G  GA
Sbjct: 126 GYLKVGLVGMEAGSSGA 142


>STM3158 [U] COG0848 Biopolymer transport protein Sty Salmonella typhimurium
           LT2
          Length = 141

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 96/138 (69%), Gaps = 2/138 (1%)

Query: 1   MAVSISENDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQK 60
           MA+ ++EN   DD  E HEINVTPFIDVMLVLLIIFMVAAPL+TVD+ ++LP S++TPQ 
Sbjct: 1   MAMRLNENL--DDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQP 58

Query: 61  KPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGV 120
           +P+KP YLS+K D T+ IG + V    ++  L A+ +  +D  +F RAD+ V Y  LM V
Sbjct: 59  RPEKPVYLSVKADNTMFIGNDPVTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKV 118

Query: 121 MELLRAGGYTHVKLVALE 138
           M++L   GY  + LV  E
Sbjct: 119 MDMLHQAGYLKIGLVGEE 136