BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0035.p (446 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 399 e-111 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 398 e-110 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 389 e-107 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 354 2e-97 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 106 1e-22 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/349 (55%), Positives = 251/349 (71%), Gaps = 3/349 (0%) Query: 31 DKVAKVGALGDQSGLYQDIGGPGSTVAAQMAIEDSGLLAKGWKIDLISADHQNKPDVAVN 90 D K+G L DQSG+Y + GG S AA+MA+ED G G +++++ADHQNK DVA N Sbjct: 26 DGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADVASN 85 Query: 91 IGKQWIDVEKVDVFVDLAASNVGLAIANLAKEKNVVNLNSGSASSDLTGVQCSPNTVHWV 150 I +QW D E+VD ++L +S+VGLA+ L+K+K + +N+G+A+++LTG QCSP HW Sbjct: 86 IARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFHWA 145 Query: 151 YDTYMLANGTGKALVKSGGDTWFFLTADYAFGQALERDTSAVVTANGGKVLGSVKHPLNN 210 YDTY LA GTG ALVK GGD+WFFLTADYAFG +LE +TS V ANGGKVLGSV+HPL Sbjct: 146 YDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHPLAT 205 Query: 211 ADFSSFLLQAQSSKAKIVGLANAGGDTTNAIKQAAEFGIVSGGQRLAGMLLFITDINALG 270 D+SSFLLQAQSS AK++GLANAG DT+NAIKQA+EFGIV+GGQRLA +L + +++ LG Sbjct: 206 TDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVHGLG 265 Query: 271 LNVAQGLNFTETFYWDLNDQTRAFTKRFMERFKKNPPTMVQAGVYSSLIHYFKALEALGG 330 L AQGL TE FYWD +D++R F +RF ER P M+ G YS+++HY KA+E G Sbjct: 266 LEAAQGLTLTEGFYWDRDDESRKFGERFKER-TGAMPNMIHTGTYSAVLHYLKAIEKAGT 324 Query: 331 NPHDGRAVVAKMKELPTDDPLFGKGSIRVDGRKIHPAYLFEVKKPSDSK 379 + D AV MKE+P +D G + +GR IH YL EVKKP +SK Sbjct: 325 D--DADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESK 371 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/356 (54%), Positives = 257/356 (72%), Gaps = 3/356 (0%) Query: 25 ASAQTMDKVAKVGALGDQSGLYQDIGGPGSTVAAQMAIEDSGLLAKGWKIDLISADHQNK 84 ++A+ D K+G L DQSG+Y D GG S AA+MA ED G G I++I+ADHQNK Sbjct: 19 SAAEISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNK 78 Query: 85 PDVAVNIGKQWIDVEKVDVFVDLAASNVGLAIANLAKEKNVVNLNSGSASSDLTGVQCSP 144 PDVA NI +QW D E+VD ++L S+VGLA+ L+KEK + +N+G+A+S+LTG QC+P Sbjct: 79 PDVASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTP 138 Query: 145 NTVHWVYDTYMLANGTGKALVKSGGDTWFFLTADYAFGQALERDTSAVVTANGGKVLGSV 204 HW YDT+ LA GTG +LV+ GGDTW+FLTADYAFG +LE T+ V + GGKVLGSV Sbjct: 139 YGFHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSV 198 Query: 205 KHPLNNADFSSFLLQAQSSKAKIVGLANAGGDTTNAIKQAAEFGIVSGGQRLAGMLLFIT 264 +HPL+ D+SSFLLQAQ+S AK+VGLANAG DT+NAIKQAAEFGIV+GGQRLA +L + Sbjct: 199 RHPLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLA 258 Query: 265 DINALGLNVAQGLNFTETFYWDLNDQTRAFTKRFMERFKKNPPTMVQAGVYSSLIHYFKA 324 +++ LGL AQGL TE FYWD +D++RAF KRF +R + P M+QAG YS+++ Y KA Sbjct: 259 EVHGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRM-PNMIQAGTYSAVLQYLKA 317 Query: 325 LEALGGNPHDGRAVVAKMKELPTDDPLFGKGSIRVDGRKIHPAYLFEVKKPSDSKS 380 ++ G + + AV K+ E+P +D G + +GR I+ YL EVKKP +SK+ Sbjct: 318 IKEAGTD--ETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKA 371 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/369 (52%), Positives = 255/369 (69%), Gaps = 5/369 (1%) Query: 13 LVMTTSLAFCG--GASAQTMDKVAKVGALGDQSGLYQDIGGPGSTVAAQMAIEDSGLLAK 70 L+ T ++ G A A D K+G L DQSG+Y D GG S AA MA+ED G Sbjct: 5 LIATLAMVLAGSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFGGKVL 64 Query: 71 GWKIDLISADHQNKPDVAVNIGKQWIDVEKVDVFVDLAASNVGLAIANLAKEKNVVNLNS 130 G +++++ADHQNKPD+A NI +QW D E+VD ++L S+V LA+ ++KEK +++ + Sbjct: 65 GVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVT 124 Query: 131 GSASSDLTGVQCSPNTVHWVYDTYMLANGTGKALVKSGGDTWFFLTADYAFGQALERDTS 190 G+A+++LTG QCSP HW YDT+ LA GTG ALVK GGD+WFFLTADYAFG +LE +T Sbjct: 125 GAATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTG 184 Query: 191 AVVTANGGKVLGSVKHPLNNADFSSFLLQAQSSKAKIVGLANAGGDTTNAIKQAAEFGIV 250 V NGG V+G+V+HPL DFSSFLLQAQSS AK++GLANAG DT+NAIKQAAEFGIV Sbjct: 185 NYVKENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIV 244 Query: 251 SGGQRLAGMLLFITDINALGLNVAQGLNFTETFYWDLNDQTRAFTKRFMERFKKNPPTMV 310 GGQRLA +L + +++ LGL+ AQGL TE FYW+ ++++ F KRFMER K P MV Sbjct: 245 QGGQRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKM-PNMV 303 Query: 311 QAGVYSSLIHYFKALEALGGNPHDGRAVVAKMKELPTDDPLFGKGSIRVDGRKIHPAYLF 370 AG YS+++ Y KA+E G + + AV ++ LP DD G++ +GR IH YL Sbjct: 304 HAGTYSAVLQYLKAIEKAGTD--ETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLL 361 Query: 371 EVKKPSDSK 379 EVKKP +SK Sbjct: 362 EVKKPDESK 370 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 354 bits (909), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 179/356 (50%), Positives = 247/356 (69%), Gaps = 5/356 (1%) Query: 24 GASAQTMDKVAKVGALGDQSGLYQDIGGPGSTVAAQMAIEDSGLLAKGWKIDLISADHQN 83 GA AQ K+G + D SGLY DI G G A +MAIED G G I+L++ADHQN Sbjct: 21 GAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGKVLGKPIELVTADHQN 80 Query: 84 KPDVAVNIGKQWIDVEKVDVFVDLAASNVGLAIANLAKEKNVVNLNSGSASSDLTGVQCS 143 K D+A + ++W+D + +D+ V S LA++ +A EK V + G+ ++ LT +C+ Sbjct: 81 KADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGIGAGTARLTNEECT 140 Query: 144 PNTVHWVYDTYMLANGTGKALVKSGGDTWFFLTADYAFGQALERDTSAVVTANGGKVLGS 203 P T+H+ YDT LA GTG A+VK GG +WFFLTADYAFG +LE DT+AVV ANGG V+GS Sbjct: 141 PYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTAAVVKANGGTVVGS 200 Query: 204 VKHPLNNADFSSFLLQAQSSKAKIVGLANAGGDTTNAIKQAAEFGIVSGGQRLAGMLLFI 263 VKHPL+ +DFSS+LLQAQ+SKA+I+GLANAGGDT N+IK A EFGI ++AG+L+FI Sbjct: 201 VKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFGITK-TMKIAGLLMFI 259 Query: 264 TDINALGLNVAQGLNFTETFYWDLNDQTRAFTKRFMERFKKNPPTMVQAGVYSSLIHYFK 323 D+++LGL A+GL T+++YWD+ND TR F R+ + KK P ++ QA YS++ +Y K Sbjct: 260 NDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSSL-QAADYSAVSNYIK 318 Query: 324 ALEALGGNPHDGRAVVAKMKELPTDDPLFGKGSIRVDGRKIHPAYLFEVKKPSDSK 379 A+ A G + D V+A++K+ +D F KG+IR DGR +H YL +VK P++SK Sbjct: 319 AVAAAGTDDPD--KVIAQLKKTQLND-FFSKGTIRADGRYVHDMYLMQVKTPAESK 371 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 9/255 (3%) Query: 35 KVGALGDQSGLYQDIGG---PGSTVAAQMAIEDSGLLAKGWKIDLISADHQNKPDVAVNI 91 ++G + +G+Y + G+ +A G+L G I+L+ D N V Sbjct: 41 RIGMVDPMTGVYAAVAQNEVTGARLAVAQINARGGIL--GRPIELLVEDSANDVGTGVQK 98 Query: 92 GKQWIDVEKVDVFVDLAASNVGLAIANLAKEKNVVNLNSGSASSDLTGVQCSPNTVHWVY 151 ++ I+ ++V + S + AIA ++ EK V+++ SG + +TG C N Sbjct: 99 ARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCN 158 Query: 152 DTYMLANGTGKALVKSGGDTWFFLTADYAFGQALERDTSAVVTANGGKVLGSVKHPLNNA 211 T M AN L G W F+T DYAFG L++ +A + GG + G+ PL Sbjct: 159 TTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPLGTT 218 Query: 212 DFSSFLLQAQSSKAKIVGLANAGGDTTNAIKQAAEFGIVSGGQ-RLAGMLLFITDINALG 270 DFS++L++A+++ ++ + G D N +KQ A+FGI G Q +AG+ + + A+ Sbjct: 219 DFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGI--GKQMHIAGLQQELESLEAMP 276 Query: 271 LNVAQGLNFTETFYW 285 G+ E +YW Sbjct: 277 PEARVGIWMFE-WYW 290