BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0021.p (328 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0241 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme... 442 e-124 AGc4963 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu... 429 e-120 SMb20663 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sm... 426 e-119 mll2981 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Mlo... 406 e-113 STM2914 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sty... 255 9e-68 >SMa0241 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme Sinorhizobium meliloti Length = 327 Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/328 (65%), Positives = 258/328 (78%), Gaps = 3/328 (0%) Query: 1 VHILILGAAGMVGRKLTERLLREGRLGRQEITRMTLQDVVAPAKPANASIPVNVVASDFA 60 +HILI+GAAGMVGRKLT+RL+++G LG + ++TL DVVAP +P + V D + Sbjct: 1 MHILIIGAAGMVGRKLTQRLVKDGTLGANSVEKLTLVDVVAPERPQGFAGTVVAREGDLS 60 Query: 61 DAGAAAPLIAERPEVIFHLAAIVSGEAEAEFDKGYRINLDGTRYLIDAIRAV--GGGYKP 118 +G A L+ RP+VIFHLAAIVSGEAE +FDKGYRINLDGTRYL DAIR GYKP Sbjct: 61 ASGEAEKLVEGRPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRLAHDQDGYKP 120 Query: 119 RLVFTSSIAVFGAPFPEKIGDEFFHTPLTSYGTQKSICELLINDYTRKGLLDGISIRLPT 178 RLVFTSSIAV GAP P I D++ TPLTSYGTQK+ICELL++DY+R+G DGI IRLPT Sbjct: 121 RLVFTSSIAVVGAPLPFPIPDDYHLTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPT 180 Query: 179 ICVRPGKPNKAASGFFSNIIREPLAGEEAVLPVSEDVRHWHASPKSAVGFLVHAGTMDLN 238 IC+RPGKPNKAASGFFSNI+REPL G+EAVLPVSEDVRHWH SP+SAVGFL+H T++L Sbjct: 181 ICIRPGKPNKAASGFFSNILREPLVGQEAVLPVSEDVRHWHTSPRSAVGFLIHGATINLE 240 Query: 239 AMGPRRNLSMPGMSVTVGEQIASLERVAGKNVTARIKRVPDPTIISIVSGWPRDFATDRA 298 +GPRRNLSMPG+S TVGEQI +L RVAG+ I+R PD I+ +V+GW F RA Sbjct: 241 KVGPRRNLSMPGLSATVGEQIEALRRVAGEKAVQLIRREPDEMIMKMVAGWAPGFEAKRA 300 Query: 299 LKLGFTTAEKTFDDIIRIHIEDEFGGKF 326 +LGF TAEK+FD+IIR+HIEDE GGK Sbjct: 301 TELGF-TAEKSFDEIIRVHIEDELGGKL 327 >AGc4963 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 328 Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 253/328 (77%), Gaps = 3/328 (0%) Query: 1 VHILILGAAGMVGRKLTERLLREGRLGRQEITRMTLQDVVAPAKPANASIPVNVVASDFA 60 +HI I+GAAGMVGRKLT+RL+++G LG + + + TL DV P PA S V+ A+D + Sbjct: 1 MHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLS 60 Query: 61 DAGAAAPLIAERPEVIFHLAAIVSGEAEAEFDKGYRINLDGTRYLIDAIRAVGG--GYKP 118 G A L+ RP+VIFHLAAIVSGEAE +FDKGYRINLDGTRYL DAIR G GYKP Sbjct: 61 APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKP 120 Query: 119 RLVFTSSIAVFGAPFPEKIGDEFFHTPLTSYGTQKSICELLINDYTRKGLLDGISIRLPT 178 R+VFTSSIAVFGAP P I DEF TPLTSYGTQK+ICELL++DY+R+G DGI IRLPT Sbjct: 121 RVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPT 180 Query: 179 ICVRPGKPNKAASGFFSNIIREPLAGEEAVLPVSEDVRHWHASPKSAVGFLVHAGTMDLN 238 IC+RPGKPN AASGFFSNI+REPL G+EAVLPV E +RHWHASP+SAVGFL+H +D+ Sbjct: 181 ICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVE 240 Query: 239 AMGPRRNLSMPGMSVTVGEQIASLERVAGKNVTARIKRVPDPTIISIVSGWPRDFATDRA 298 +GPRRNLSMPG+S TVGEQI +L +VAG+ A I+R P+ I+ + GW F RA Sbjct: 241 KVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKRA 300 Query: 299 LKLGFTTAEKTFDDIIRIHIEDEFGGKF 326 +LGF TAE +F++II++HIEDE GG Sbjct: 301 RELGF-TAESSFEEIIQVHIEDELGGSL 327 >SMb20663 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme Sinorhizobium meliloti Length = 327 Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/328 (64%), Positives = 252/328 (76%), Gaps = 5/328 (1%) Query: 1 VHILILGAAGMVGRKLTERLLRE-GRLGRQEITRMTLQDVVAPAKPANASIPVNVVASDF 59 +H++++GAAGM+GRKL ERL E G LGR EI +TL DVV P P S +A D Sbjct: 1 MHVMVIGAAGMIGRKLVERLAAEPGSLGR-EIASLTLADVVEPPLPPAFSSLATTLAIDL 59 Query: 60 ADAGAAAPLIAERPEVIFHLAAIVSGEAEAEFDKGYRINLDGTRYLIDAIRAVGGG--YK 117 + G+A LI+ RP+VI HLAAIVSGEAEA+FDKGY +NLDGTR L +AIR G Y Sbjct: 60 STEGSAERLISSRPDVIIHLAAIVSGEAEADFDKGYLVNLDGTRALFEAIRREGERERYL 119 Query: 118 PRLVFTSSIAVFGAPFPEKIGDEFFHTPLTSYGTQKSICELLINDYTRKGLLDGISIRLP 177 PR++F SSIAVFG PFPEKIGDEFF TPLTSYGTQK+ICELL+ DYTR+G DGI IRLP Sbjct: 120 PRVLFASSIAVFGQPFPEKIGDEFFTTPLTSYGTQKAICELLLADYTRRGFFDGIGIRLP 179 Query: 178 TICVRPGKPNKAASGFFSNIIREPLAGEEAVLPVSEDVRHWHASPKSAVGFLVHAGTMDL 237 TIC+RPGKPNKAASGFFSNI+REPL G+EA+LPV E VRHW ASP+SAVGF +HA MD Sbjct: 180 TICIRPGKPNKAASGFFSNILREPLVGQEAILPVDEKVRHWFASPRSAVGFFIHAARMDT 239 Query: 238 NAMGPRRNLSMPGMSVTVGEQIASLERVAGKNVTARIKRVPDPTIISIVSGWPRDFATDR 297 +GPRRNL+MPG+S VGE+I +L R+AG+ + I+R PDP I +IVSGW DF R Sbjct: 240 GVIGPRRNLTMPGLSALVGEEIEALARIAGQKAVSLIRREPDPVIQTIVSGWATDFDARR 299 Query: 298 ALKLGFTTAEKTFDDIIRIHIEDEFGGK 325 A +LGF TAE FD+IIRIHIEDE GG+ Sbjct: 300 ARELGF-TAESNFDEIIRIHIEDELGGR 326 >mll2981 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Mlo Mesorhizobium loti Length = 325 Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/326 (62%), Positives = 246/326 (75%), Gaps = 3/326 (0%) Query: 1 VHILILGAAGMVGRKLTERLLREGRLGRQEITRMTLQDVVAPAKPANASIPVNVVASDFA 60 + ILI GAAGMVGRKL RL ++G L + IT + L D+V+P PA + ++ D A Sbjct: 1 MRILITGAAGMVGRKLIARLAKDGTLRGKAITALDLHDIVSPQAPAMEGVSISTHTGDLA 60 Query: 61 DAGAAAPLIAERPEVIFHLAAIVSGEAEAEFDKGYRINLDGTRYLIDAIRAVGGGYKPRL 120 +AGAA L A RP+V+FHLA IVSGEAEA F+ GYR+NLDGTR L DAIR G Y PR+ Sbjct: 61 EAGAAESLAASRPDVVFHLAGIVSGEAEANFELGYRVNLDGTRALFDAIRLAG--YAPRV 118 Query: 121 VFTSSIAVFGAPFPEKIGDEFFHTPLTSYGTQKSICELLINDYTRKGLLDGISIRLPTIC 180 VFTSSIAVFGAPFP+ I D+F TPLTSYGTQK + E L+ DY+R+G DGI IRLPTIC Sbjct: 119 VFTSSIAVFGAPFPDVIPDDFHPTPLTSYGTQKQMSEALLADYSRRGFFDGIGIRLPTIC 178 Query: 181 VRPGKPNKAASGFFSNIIREPLAGEEAVLPVSEDVRHWHASPKSAVGFLVHAGTMDLNAM 240 VRPGKPNKAASGFFS IIREPL+G+EA+LPV V H HASP+SAV FL+HA +D + Sbjct: 179 VRPGKPNKAASGFFSGIIREPLSGQEAILPVPRSVAHTHASPRSAVNFLIHAAGIDGGVV 238 Query: 241 GPRRNLSMPGMSVTVGEQIASLERVAGKNVTARIKRVPDPTIISIVSGWPRDFATDRALK 300 GPRRNL+MPG++VTVGEQI +LER+AG V I+ VPD TI +IV GWP F +R+ + Sbjct: 239 GPRRNLTMPGVAVTVGEQIEALERIAGPKVVKLIREVPDETIWAIVKGWPTRFEANRSRE 298 Query: 301 LGFTTAEKTFDDIIRIHIEDEFGGKF 326 LGF +AEK+FD+IIR HIEDE G+ Sbjct: 299 LGF-SAEKSFDEIIRAHIEDELDGQL 323 >STM2914 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sty Salmonella typhimurium LT2 Length = 316 Score = 255 bits (652), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 142/325 (43%), Positives = 195/325 (60%), Gaps = 10/325 (3%) Query: 1 VHILILGAAGMVGRKLTERLLREGRLGRQEITRMTLQDVVAPAKPANASIPVNVVASDFA 60 + I+I G G +G+KL LL + L D+ PA+ ++ S + + +D Sbjct: 1 MQIIITGGGGFLGQKLASALLNSS----LAFNELLLVDLKMPARLSD-SPRLRCLEADLT 55 Query: 61 DAGAAAPLIAERPEVIFHLAAIVSGEAEAEFDKGYRINLDGTRYLIDAIRAVGGGYKPRL 120 G +I V++HLAAIVS AE +FD G+++NLD TR L++A R K R Sbjct: 56 QPGVLESVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLEACRR--QPQKIRF 113 Query: 121 VFTSSIAVFGAPFPEKIGDEFFHTPLTSYGTQKSICELLINDYTRKGLLDGISIRLPTIC 180 VF+SS+AV+G PE + D TP +SYG QK+ CELL+NDYTRKG +DG+++RLPTIC Sbjct: 114 VFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKGYVDGLALRLPTIC 173 Query: 181 VRPGKPNKAASGFFSNIIREPLAGEEAVLPVSEDVRHWHASPKSAVGFLVHAGTMDLNAM 240 VRPGKPN+AAS F S IIREPL GE V PVSE +R W +SP + + L A T L A Sbjct: 174 VRPGKPNRAASSFVSAIIREPLQGETTVCPVSESLRLWISSPATVIHNLSLAAT--LPAP 231 Query: 241 GPRRNLSMPGMSVTVGEQIASLERVAGKNVTARIKRVPDPTIISIVSGWPRDFATDRALK 300 G ++++PG+SVTVGE + +L + G+ R+ D + IV+ WP RAL Sbjct: 232 GEASSINLPGISVTVGEMLETLCQAGGQAARDRVTHQRDEGVEKIVASWPGRIDNQRALA 291 Query: 301 LGFTTAEKTFDDIIRIHIEDEFGGK 325 LGF A+K FDDII +D+ G+ Sbjct: 292 LGF-VADKRFDDIIERFRQDDMEGR 315