BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0009.p (687 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF0636 [R] COG4666 TRAP-type uncharacterized transport system, f... 286 8e-77 BH2945 [R] COG4666 TRAP-type uncharacterized transport system, f... 274 6e-73 PM1580 [R] COG4666 TRAP-type uncharacterized transport system, f... 253 9e-67 BH2938 [R] COG4666 TRAP-type uncharacterized transport system, f... 243 1e-63 BMEI0797 Non COG 229 1e-59 >AF0636 [R] COG4666 TRAP-type uncharacterized transport system, fused permease components Afu Archaeoglobus fulgidus Length = 679 Score = 286 bits (733), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 203/630 (32%), Positives = 327/630 (51%), Gaps = 63/630 (10%) Query: 27 EAEVTRVRTLRGVWRWALVVAAAATIL---LCINQQFSLRFFIDYTQLNTEYFYLLIALM 83 E + R L+G R+AL+V+A A + IN F+ + + + + + IAL Sbjct: 15 EKKFLHERDLKG--RYALIVSAVAIVFSTFHVINGSFT--GLLQHDIVKSVHLAFAIAL- 69 Query: 84 LPFTFLIFPGTERAPLNRIPWYDLALAVATFAASIWLMLNVRK---AAQYGWESDGAPRN 140 FLI+P +++ +IP+YD LA F + +L +N ++ A G+ P + Sbjct: 70 ---AFLIYPLSKKRTETKIPFYDFILAAVGFYVAFYLAMNYKELLFRAAIGY----TPFD 122 Query: 141 VIIAGLVMWVMLMEALRRTGGWSLLLSVLPFTVYPLFAEASWLGPFRGSQLTLDQTTAYH 200 IA L + + ++EA RR +L++ + F +Y F AS G Q + Sbjct: 123 FFIAVLAV-IFVLEATRRVVNPALVVVAIIFILYAKFG-ASLPGVLSHPSYDWKQILEHL 180 Query: 201 VLSGESLLGIPIQAFADTVIGFLVFGTALMMTGAGKFFINLAFALCGTFRGGAAKVCIFA 260 + E + G PI + V+ F++FG L +GAG+FFI+LA++L G GG AK + + Sbjct: 181 YYTKEGIFGTPIAVSSSFVVLFVIFGAFLERSGAGRFFIDLAYSLTGWMVGGPAKAAVVS 240 Query: 261 SGLLGMMSGSIVSNVLTAGTMTIPVMKKSGFRASYAGAIEACASTGAVLAPPVMGATAFV 320 S L+G +SGS V+N +T G TIP+MK+ G++ +AGA+E ASTG + PP+MGA AF+ Sbjct: 241 SALMGTISGSSVANTVTTGAFTIPLMKRVGYKPEFAGAVEPAASTGGQIMPPIMGAAAFI 300 Query: 321 IAQFLNISYAEVAVAAIIPAALYYVGLFMQVDSYAARHGLKGIPRAELPRVMDTIKDGWY 380 +A+F+ + Y + AAIIPA LY+ G+F VD A + L+G+ R ELP + +K GWY Sbjct: 301 MAEFVGMPYINIVYAAIIPAFLYFFGVFSAVDFEARKENLRGLSREELPSPLQVLKGGWY 360 Query: 381 YVFVIALLIVMLLYFKRESHAP-------FYATALLLVLNQIFSK-----ESRWTLGAIG 428 Y+ + ++I ML+ + P YA +++L + E R LG + Sbjct: 361 YLVPLFIIIYMLV----SGYTPILAGVYSIYAVIAIMILKPLIMNYRKPAEQREPLGKVL 416 Query: 429 K--------FLEVNGRTFVELVGILAGCGLLIGAFSMTGVVSSLANDLLTLAGDNAFLLL 480 K LE GR+ + A G+++G ++TG+ +A + L+ ++L Sbjct: 417 KGSILNILSALEHGGRSATTVAMACASAGIIVGVVTLTGLGFKIAAAAIALSHGYLPIIL 476 Query: 481 VMCAFTSLILGLGLTTTACYIFLAILVAPA----------------LEKLGLNRMAVHMF 524 + SLILG+G+ TTA YI + + APA LE + HMF Sbjct: 477 ALTMLVSLILGMGVPTTANYIITSTIAAPAIITFMAQGYGMPVREFLETYPELVLPAHMF 536 Query: 525 IFYWGMLSSITPPVAIASFAAAGIAGSPAMKTGWESMWVGSIIYFIPFFFVLNPALVMQG 584 +FY+G+ + +TPPVA+A++A + IAG KTG ++ +G Y +P+ F+ +PAL++ G Sbjct: 537 VFYFGVAADLTPPVALAAYAGSAIAGGDPWKTGINAVKIGIGKYLVPYLFIFSPALLLIG 596 Query: 585 ---PSPYLAGLGLMALAACGTLFICGGIQG 611 P+ L L+A G + I G G Sbjct: 597 VKTPADVFNLLILLATVMLGIMAINAGTIG 626 >BH2945 [R] COG4666 TRAP-type uncharacterized transport system, fused permease components Bha Bacillus halodurans Length = 656 Score = 274 bits (700), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 183/545 (33%), Positives = 313/545 (57%), Gaps = 7/545 (1%) Query: 69 TQLNTEYFYLLIALMLPFTFLIFPGTERAPLNRIPWYDLALAVATFAASIWLMLNVRKAA 128 T L ++ L +A++L F ++P ++A +P YD + + +I+ ++ Sbjct: 60 TPLTLQHRSLHVAVILALVFFLYPPFKKANRKSVPLYDWLCVLLALSTTIYFFVDYAGIV 119 Query: 129 QYGWESDGAPRNV-IIAGLVMWVMLMEALRRTGGWSLLLSVLPFTVYPLFAEASWLGPFR 187 G G P ++ G+++ ++++EA RR GW+L L + F +Y LF G +R Sbjct: 120 HRG----GIPNTYDLLFGVILVILILEAARRVTGWALPLLAVLFFIYGLFGR-ELSGIWR 174 Query: 188 GSQLTLDQTTAYHVLSGESLLGIPIQAFADTVIGFLVFGTALMMTGAGKFFINLAFALCG 247 D+ + ++ E + G I A + F++FG L +G G+FF ++A A+ G Sbjct: 175 HRGYGWDELINFMYVTTEGVYGTAIGVSATYIFLFILFGAFLSKSGMGQFFNDMALAIAG 234 Query: 248 TFRGGAAKVCIFASGLLGMMSGSIVSNVLTAGTMTIPVMKKSGFRASYAGAIEACASTGA 307 +GG AKV + ASG LG ++G+ ++NV+T G+ TIP+MKK G+ ++AGA+EA AS G Sbjct: 235 QTKGGPAKVSVIASGFLGSINGAAIANVVTTGSFTIPLMKKIGYHRNFAGAVEAAASVGG 294 Query: 308 VLAPPVMGATAFVIAQFLNISYAEVAVAAIIPAALYYVGLFMQVDSYAARHGLKGIPRAE 367 + PP+MGA AF++A+ L I Y+++A+AA++PA L+Y+ + +Q+ A + GLKGI + Sbjct: 295 QILPPIMGAAAFIMAEILGIPYSQIALAALLPALLFYLAIIVQIHLRATKLGLKGISKEN 354 Query: 368 LPRVMDTIKDGWYYVFVIALLIVMLLYFKRESHAPFYATALLLVLNQIFSKESRWTLGAI 427 LP+VMD +K+ + + + L+ ML + R + T ++ V +F K +R T+ + Sbjct: 355 LPQVMDVLKERGHLLIPLFFLLYMLFFSGRTIIYSAFLTIIVTVFVAMFRKTTRMTIRDL 414 Query: 428 GKFLEVNGRTFVELVGILAGCGLLIGAFSMTGVVSSLANDLLTLAGDNAFLLLVMCAFTS 487 LE R + + A G+++G +MTG LAN ++ L G++ FL L Sbjct: 415 LDALEQGARNAIGVAVACACVGIIVGVATMTGFGLKLANGIVMLGGESLFLTLFFTMIAC 474 Query: 488 LILGLGLTTTACYIFLAILVAPALEKLGLNRMAVHMFIFYWGMLSSITPPVAIASFAAAG 547 +ILG+GL + YI A + APAL LG+ + H+F+FY+G+ ++ITPPVA+A+FAAAG Sbjct: 475 IILGMGLPSIPTYIITATMAAPALVTLGIEPLVAHLFVFYFGLFANITPPVALAAFAAAG 534 Query: 548 IAGSPAMKTGWESMWVGSIIYFIPFFFVLNPALVMQGPSPYLAGLGLMALAACGTLFICG 607 I+G MKTG+ SM + + +P+ FV N AL++ + ++ G ++ + G + + Sbjct: 535 ISGGDQMKTGFISMKLAIAGFIVPYMFVYNEALLLLN-TTFIEGALVVVTSITGVVMLGA 593 Query: 608 GIQGY 612 +GY Sbjct: 594 AAEGY 598 >PM1580 [R] COG4666 TRAP-type uncharacterized transport system, fused permease components Pmu Pasteurella multocida Length = 660 Score = 253 bits (647), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 190/597 (31%), Positives = 314/597 (52%), Gaps = 46/597 (7%) Query: 88 FLIFPGTERAPLNRIPWYD-LALAVATFAASIWLMLNVRKAAQYGWESDGAPRNVIIAGL 146 FLI+P T + + WYD L + +A S+ + V + G P I Sbjct: 77 FLIYPATRKHRQGGVAWYDWLWVGIA----SLGMGYLVHQYNDIMTIRGGIPNTADIVVA 132 Query: 147 VMWVM-LMEALRRTGGWSLLLSVLPFTVYPLFAEASWLGPFRGSQLTLDQTTAYH--VLS 203 ++ V+ ++E RR G L+L L F YP + ++ P R D + L Sbjct: 133 ILTVLAVLEVTRRITGLILVLFALLFLAYPFVSSMDFI-PDRLLTRPYDVGDIFGQLYLK 191 Query: 204 GESLLGIPIQAFADTVIGFLVFGTALMMTGAGKFFINLAFALCGTFRGGAAKVCIFASGL 263 E L I A + F++FG L +G G+ F ++A A+ G +GG AKV + +SG Sbjct: 192 TEGLYSSAIGASVTFIFLFILFGAFLAKSGMGQLFNDIALAIAGDKQGGPAKVAVISSGF 251 Query: 264 LGMMSGSIVSNVLTAGTMTIPVMKKSGFRASYAGAIEACASTGAVLAPPVMGATAFVIAQ 323 +G ++G+ V+NV++ G TIP+MKK G+ ++AGA+EA AS G + PP+MGA+AF++A+ Sbjct: 252 MGSINGAAVANVVSTGAFTIPLMKKIGYHRNFAGAVEASASVGGQILPPIMGASAFIMAE 311 Query: 324 FLNISYAEVAVAAIIPAALYYVGLFMQVDSYAARHGLKGIPRAELPRVMDTIKDGWYYVF 383 +SY +A+AA+ PA LYY+G+ QV A + LKG+ + +LP+ +K + + Sbjct: 312 TTGVSYGTIALAALFPAVLYYLGVIAQVHFRAGKQNLKGLSKDQLPQFKAIMKARGHML- 370 Query: 384 VIALLIVMLLYFKRES----HAPFYATALLLVLNQIFSKESRWTLGAIGKFLEVNGRTFV 439 L IV L++F ES +A Y + ++++Q+ KE+R + I LE + + Sbjct: 371 ---LPIVALVWFLIESVPIGYAAVYTIGITVLISQL-RKETRMGIKEIIAALEDGAKQSL 426 Query: 440 ELVGILAGCGLLIGAFSMTGVVSSLANDLLTLAGDNAFLLLVMCAFTSLILGLGLTTTAC 499 ++ A G++IG ++T + + + ++TL + L + S+ILG+GL + Sbjct: 427 SVMAACAVVGIVIGVVNLTSFGTVITSSIVTLGAGSLLFTLFLTMIASMILGMGLPSIPA 486 Query: 500 YIFLAILVAPALEKLGLNRMAVHMFIFYWGMLSSITPPVAIASFAAAGIAGSPAMKTGWE 559 YI A + APAL + + HMF+FY+G+ ++ITPPVA+A+FA AGIA MKTGW+ Sbjct: 487 YIITATMAAPALATFNVPVLVAHMFVFYFGIFANITPPVALAAFAGAGIAQGDPMKTGWQ 546 Query: 560 SMWVGSIIYFIPFFFVLNPALVMQG-----------PSPYLAG-LGLMALAACGTLFICG 607 S+ + + +PF FV NP ++M P P++ + ++ + G L + Sbjct: 547 SLRLAVAGFIVPFMFVYNPNMLMIDVSNVAVTAKTFPLPHIVDIISVLISSTIGVLGLSA 606 Query: 608 GIQGYQVFVGDLRGAGALEWPLRVLLVIGGFVLATPGGGINPLSQLQVSLLGLAILA 664 +GY + A + W RV+L IG F+L P +L L+G+A++A Sbjct: 607 ATEGY------FKQAMPI-WQ-RVILAIGSFMLIIP--------ELMTDLIGIAVVA 647 >BH2938 [R] COG4666 TRAP-type uncharacterized transport system, fused permease components Bha Bacillus halodurans Length = 654 Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 182/582 (31%), Positives = 303/582 (52%), Gaps = 27/582 (4%) Query: 14 EFEDPHAGLDNLQE-----AEVTRVRTLRGVWRWALVVAAAATILLCINQQFSLRFFIDY 68 E + A +D +E + + RT W W + + A SL F Y Sbjct: 3 EKQSEAATVDKAEEILRKYDKESNYRTNLQKWVWVVTILA-----------ISLTLFQLY 51 Query: 69 TQLNTEYFYLL-----IALMLPFTFLIFPGTERAPLNR--IPWYDLALAVATFAASIWLM 121 T Y L+ +A L F+++P +R+ L + +PWYD LA+ AA+ +++ Sbjct: 52 TSFRGAYVTLIQGAIHLAGGLSLIFILYPA-KRSLLKKKGVPWYDGVLALLALAANFYIV 110 Query: 122 LNVRKAAQYGWESDGAPRNVIIAGLVMWVMLMEALRRTGGWSLLLSVLPFTVYPLFAEAS 181 ++ G II + ++++EA RR G +++ +Y LF + Sbjct: 111 FEYQRLTSNQVTILGYTDLDIIVATLGVLLVLEATRRAVGLPIVIIATVALLYGLFGQHF 170 Query: 182 WLGPFRGSQLTLDQTTAYHVLSGESLLGIPIQAFADTVIGFLVFGTALMMTGAGKFFINL 241 + FR + D+ + E++ G PI+ + + FL FG L TG G+FF +L Sbjct: 171 PVAQFRHAGFDFDRLMTLMFFNTEAIFGTPIRISSTFIFLFLFFGVMLTKTGIGQFFNDL 230 Query: 242 AFALCGTFRGGAAKVCIFASGLLGMMSGSIVSNVLTAGTMTIPVMKKSGFRASYAGAIEA 301 AF G GG AK + ASGL GM++GS V+N +++G+ TIP+MK++GF+ ++ A EA Sbjct: 231 AFGATGRMTGGTAKAAVTASGLQGMVTGSSVANTVSSGSFTIPMMKRAGFKPEFSAAAEA 290 Query: 302 CASTGAVLAPPVMGATAFVIAQFLNISYAEVAVAAIIPAALYYVGLFMQVDSYAARHGLK 361 ASTG + PP+MGA AF++A I Y E+ + AIIPA LY+ G+FM A + G++ Sbjct: 291 SASTGGQIMPPIMGAAAFIMASNTAIPYQEIILIAIIPALLYFTGVFMGTHFEAKKQGIR 350 Query: 362 GIPRAELPRVMDTIKDGWYYVFVIALLIVMLLYFKRESHAPFYATALLLVLNQIFSKESR 421 G+P+ +LP + ++ ++A+++++ L + A F A V +F K++R Sbjct: 351 GLPKEQLPSLKGILRRLDLLAPLVAIIVMLYLGYSPTRAALFGIGAAFFV--SLFRKDTR 408 Query: 422 WTLGAIGKFLEVNGRTFVELVGILAGCGLLIGAFSMTGVVSSLANDLLTLAGDNAFLLLV 481 + I LE R + ++ A G++ G + TG+ +A ++ LAG FL+L Sbjct: 409 MGIRDIFDTLEQGARIALPVIAACATAGIIAGIVTTTGLGGKIAGGIIDLAGGVFFLVLF 468 Query: 482 MCAFTSLILGLGLTTTACYIFLAILVAPALEKL-GLNRMAVHMFIFYWGMLSSITPPVAI 540 ++LG+GL TTA Y+ A + APAL + +A H F+FY+G+++ ITPPV + Sbjct: 469 FTMIACILLGMGLPTTANYVVTASMAAPALMAFDSVPLIAAHFFVFYFGIVADITPPVCL 528 Query: 541 ASFAAAGIAGSPAMKTGWESMWVGSIIYFIPFFFVLNPALVM 582 A++A AGIA + MK G + + + IP+ F+ NP L++ Sbjct: 529 AAYAGAGIARANPMKAGVTAFKLAIAAFIIPYAFMYNPVLLL 570 >BMEI0797 Non COG Length = 682 Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 181/551 (32%), Positives = 292/551 (52%), Gaps = 50/551 (9%) Query: 154 EALRRTGGWSL-LLSVLPFTVYPLFAEASWLGPFRGSQLTLDQTTAYHVLSGESLLGIPI 212 EA RR+ GW L ++SVL F +Y L+ S G T+ Q + L+ + + GI + Sbjct: 155 EATRRSVGWPLPIISVL-FMLYALYGP-SMPGILVHPGATVSQLVDHLYLTTQGIYGIAL 212 Query: 213 QAFADTVIGFLVFGTALMMTGAGKFFINLAFALCGTFRGGAAKVCIFASGLLGMMSGSIV 272 A V F++FG G G+ F++ A + G F GG AKV IF S L GM+SGS V Sbjct: 213 GVVATYVFHFVLFGVFATRIGLGQLFLDCAAWVAGRFAGGPAKVSIFGSALFGMISGSSV 272 Query: 273 SNVLTAGTMTIPVMKKSGFRASYAGAIEACASTGAVLAPPVMGATAFVIAQFLNISYAEV 332 +N +T G++TIP M + G++ +A A+E+ +STG + PP+MGA AF++ +FLN+ Y + Sbjct: 273 ANAVTVGSLTIPAMIRLGYKRHFAAAVESASSTGGQITPPIMGAAAFLMIEFLNLPYTTI 332 Query: 333 AVAAIIPAALYYVGLFMQVDSYAARHGLKGIPRAELPRVMDTIKDGWYYVFVIALLIVML 392 +AAI+PA +++ G+ MQV A R GL+G+ + E+P + + +K W + + +LI +L Sbjct: 333 ILAAIVPAFMHFFGVLMQVHFEAKRTGLRGMTKEEMPDLKEALKRDWPTIIPLVVLIAVL 392 Query: 393 LYFKRESHAPFYATALLLVLNQIFSKESRWTLGAIGKFLEVNGRTFVELVGILAGCGLLI 452 L A F+ L + + + + R T+G + + L + + + A G+++ Sbjct: 393 LSGYTPYLAAFWGITLCIAVG-LLNPRKRMTIGEVFEGLRDGAKYALAVGAAAATVGIIV 451 Query: 453 GAFSMTGV-------VSSLANDLLTLAGD------------NAFLLLVMCAFTSLILGLG 493 G ++TGV V+S A L T G LVM +++G G Sbjct: 452 GVVTLTGVGFKISYIVTSTAAQLATYFGTISPVSWFAPQTLTLLFTLVMTGMVCILMGCG 511 Query: 494 LTTTACYIFLAILVAPALEKLGLNRMAVHMFIFYWGMLSSITPPVAIASFAAAGIAGSPA 553 + TTA YI +A + APAL LG+ + H F+FY+G+L+ ITPPVA+A++AAAG+AG+ Sbjct: 512 IPTTANYIIMATIAAPALGLLGVEPIVAHFFVFYYGVLADITPPVALAAYAAAGMAGADP 571 Query: 554 MKTGWESMWVGSIIYFIPFFFVLNPALVM-----QGPSPYLAGLG-LMALAACGTLFICG 607 KTG + +G +PF FV +P+L++ P ++A G ++ + A G Sbjct: 572 FKTGNTAFRLGLGKVLVPFVFVFSPSLLLVTSNFNWPDFFIAFFGCVIGITALG-----A 626 Query: 608 GIQGYQVFVGDLRGAGALEWPLRVLLVIGGFVLATPGGGINPLSQLQVSLLGLAILAPTV 667 + G+ + + W VLL+ +L P ++ S++GL +L P V Sbjct: 627 ALSGFFLVRTKI-------WE-NVLLIFAAMLLVAP--------EIYSSIVGLILLLPVV 670 Query: 668 LIALVLVRRQA 678 + LV RR A Sbjct: 671 VRHLVASRRPA 681