BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0002.p (281 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc04231 [L] COG0556 Helicase subunit of the DNA excision repair... 281 2e-75 AGc3636 [L] COG0556 Helicase subunit of the DNA excision repair ... 279 4e-75 BMEI0501 [L] COG0556 Helicase subunit of the DNA excision repair... 274 2e-73 CC2981 [L] COG0556 Helicase subunit of the DNA excision repair c... 260 3e-69 mlr2631 [L] COG0556 Helicase subunit of the DNA excision repair ... 233 2e-61 >SMc04231 [L] COG0556 Helicase subunit of the DNA excision repair complex Sme Sinorhizobium meliloti Length = 985 Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 134/173 (77%), Positives = 151/173 (87%), Gaps = 4/173 (2%) Query: 108 GVKATADALENLIRDGRPEFRKDDGSMRVWTPHRPPRPEKSEGGVRFEIKSDYQPKGDQP 167 GV AT +AL LI G P F+ DG ++WTPHRP RPEKSEGG+ ++SDY+P GDQP Sbjct: 116 GVTATVEALAKLIESGNPLFK--DG--KLWTPHRPARPEKSEGGIAIRMQSDYEPAGDQP 171 Query: 168 TAIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFK 227 TAIA+LV+G+ +R QVLLGVTGSGKT+TMAKVIEATQRPA+ILAPNKTLAAQLY EFK Sbjct: 172 TAIADLVDGLTSGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFK 231 Query: 228 NFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 280 NFFPDNAVEYFVSYYDYYQPEAYVPR+DTYIEK+SSINEQIDRMRHSATR+LL Sbjct: 232 NFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRSLL 284 >AGc3636 [L] COG0556 Helicase subunit of the DNA excision repair complex Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 988 Score = 279 bits (714), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 135/172 (78%), Positives = 149/172 (86%), Gaps = 4/172 (2%) Query: 109 VKATADALENLIRDGRPEFRKDDGSMRVWTPHRPPRPEKSEGGVRFEIKSDYQPKGDQPT 168 V AT +AL LI G P F+ DG M WTPHRP RP KSEGGV + S+YQP GDQPT Sbjct: 130 VTATVEALSALIESGNPLFK--DGKM--WTPHRPARPPKSEGGVTIRMDSEYQPAGDQPT 185 Query: 169 AIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKN 228 AIA+LVEGI+ +R+QVLLGVTGSGKT+TMAKVIEATQRPA+ILAPNKTLAAQLY EFKN Sbjct: 186 AIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKN 245 Query: 229 FFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 280 FFPDNAVEYFVSYYDYYQPEAYVPR+DT+IEK+SSINEQIDRMRHSATR+LL Sbjct: 246 FFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLL 297 >BMEI0501 [L] COG0556 Helicase subunit of the DNA excision repair complex Bme Brucella melitensis Length = 909 Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 154/261 (59%), Positives = 183/261 (70%), Gaps = 27/261 (10%) Query: 27 WDRRAGGEAAAHRARASTR-----ETSEGVAR--RDTSGLGEAPQANYGTSATIPTLDPE 79 W + G EAA RA+ + E S+ +R R TS +G A A T+A L+P Sbjct: 8 WAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTS-MGGAASAKERTAAG---LNPV 63 Query: 80 LARQLGLPTAEDDEEALARPPRSKMEALGVKATADALENLIRDGRPEFRKDDGSMRVWTP 139 + L EEA P G AT AL +LI+ G P F+ + +WTP Sbjct: 64 AGLDISL------EEAAGLSPS------GATATVQALADLIQSGNPLFKHGE----LWTP 107 Query: 140 HRPPRPEKSEGGVRFEIKSDYQPKGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKTYTMA 199 HRP RPEKSEGG+ +++ ++P GDQPTAI +LVEG++ DRTQVLLGVTGSGKT+TMA Sbjct: 108 HRPARPEKSEGGIPIRMETSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMA 167 Query: 200 KVIEATQRPALILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIE 259 +VIE TQRPALILAPNKTLAAQLYGEFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIE Sbjct: 168 QVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIE 227 Query: 260 KDSSINEQIDRMRHSATRALL 280 K+SSINEQIDRMRHSATRALL Sbjct: 228 KESSINEQIDRMRHSATRALL 248 >CC2981 [L] COG0556 Helicase subunit of the DNA excision repair complex Ccr Caulobacter vibrioides Length = 749 Score = 260 bits (664), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 121/145 (83%), Positives = 133/145 (91%) Query: 136 VWTPHRPPRPEKSEGGVRFEIKSDYQPKGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKT 195 +WTPHRP RP+KSEGG +F++ SDYQP GDQPTAIAELVEG+ D+ QVLLGVTGSGKT Sbjct: 29 LWTPHRPSRPDKSEGGKKFKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGKT 88 Query: 196 YTMAKVIEATQRPALILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTD 255 +TMA+VI TQRPALILAPNKTLAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTD Sbjct: 89 FTMAQVIARTQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRTD 148 Query: 256 TYIEKDSSINEQIDRMRHSATRALL 280 TYIEKDSSINEQIDRMRHSATRA+L Sbjct: 149 TYIEKDSSINEQIDRMRHSATRAIL 173 >mlr2631 [L] COG0556 Helicase subunit of the DNA excision repair complex Mlo Mesorhizobium loti Length = 870 Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 109/123 (88%), Positives = 117/123 (95%) Query: 158 SDYQPKGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKT 217 SD++P GDQPTAI +LVEG+D NDRTQVLLGVTGSGKT+TMAKVIE TQRPALILAPNKT Sbjct: 3 SDFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 62 Query: 218 LAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATR 277 LAAQLY EFK FFPDNAVEYFVSYYDYYQPEAYVPRTDT+IEK+SSINEQIDRMRHSATR Sbjct: 63 LAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSATR 122 Query: 278 ALL 280 +LL Sbjct: 123 SLL 125