BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0001.p         (353 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0501 [L] COG0556 Helicase subunit of the DNA excision repair...   236   6e-62
mlr2631 [L] COG0556 Helicase subunit of the DNA excision repair ...   231   2e-60
AGc3636 [L] COG0556 Helicase subunit of the DNA excision repair ...   222   1e-57
CC2981 [L] COG0556 Helicase subunit of the DNA excision repair c...   220   4e-57
SMc04231 [L] COG0556 Helicase subunit of the DNA excision repair...   217   3e-56

>BMEI0501 [L] COG0556 Helicase subunit of the DNA excision repair complex Bme
           Brucella melitensis
          Length = 909

 Score =  236 bits (602), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 123/143 (86%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           +ADLVA QYKR    F RG+FRVRGD I+IFPAH EDRAWR++LFGD IETI EFDPLTG
Sbjct: 290 LADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTG 349

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
            K  +L+ +K+YANSHYVTPRPTL QAIKSIK ELK RLD+L   GRLLEAQRL+QRTTF
Sbjct: 350 QKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTF 409

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           DLEM+EATGSCAGIENYSRYLTG
Sbjct: 410 DLEMLEATGSCAGIENYSRYLTG 432


>mlr2631 [L] COG0556 Helicase subunit of the DNA excision repair complex Mlo
           Mesorhizobium loti
          Length = 870

 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/143 (76%), Positives = 121/143 (84%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           +ADLVA QYKR    F RG+FRVRGD I+IFPAH EDRAWR+++FGD IE I EFDPLTG
Sbjct: 167 LADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTG 226

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
            K  EL+ +K+YANSHYVTPRPTL QAIKSIK ELKQRL +L   GRLLEAQRLEQRT F
Sbjct: 227 QKTGELKSVKIYANSHYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRTRF 286

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           DLEM+EATGSCAGIENYSRYLTG
Sbjct: 287 DLEMLEATGSCAGIENYSRYLTG 309


>AGc3636 [L] COG0556 Helicase subunit of the DNA excision repair complex Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 988

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 120/143 (83%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           +ADLVA QYKR   +F RG+FRVRGD I+IFPAH ED AWR+++FGD I++I EFDPLTG
Sbjct: 339 LADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTG 398

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
            K  +L+ +K+YANSHYVTPRPTL  AIKSIK ELK RL +L   GRLLEAQRLEQRT +
Sbjct: 399 QKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRY 458

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           D+EM+EATGSCAGIENYSRYLTG
Sbjct: 459 DIEMLEATGSCAGIENYSRYLTG 481


>CC2981 [L] COG0556 Helicase subunit of the DNA excision repair complex Ccr
           Caulobacter vibrioides
          Length = 749

 Score =  220 bits (561), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 118/143 (82%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           IADLVA QYKR    F RGTFR RGD I+IFPAHYEDRAWRV +FGD +E + EFD LTG
Sbjct: 215 IADLVAQQYKRNDQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALSEFDTLTG 274

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
            K  +LE IK+YANSH+VTPRPTL QAI +I+ ELK+RL+ L   G+LLEAQRLEQRTTF
Sbjct: 275 KKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQRLEQRTTF 334

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           DLEM+E TGSCAGIENYSRYL+G
Sbjct: 335 DLEMIETTGSCAGIENYSRYLSG 357


>SMc04231 [L] COG0556 Helicase subunit of the DNA excision repair complex Sme
           Sinorhizobium meliloti
          Length = 985

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 119/143 (83%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           +ADLVA QYKR   +F RG+FRVRGD I+IFPAH ED AWR+++FGD I++I EFDPLTG
Sbjct: 326 LADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTG 385

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
            K  +L+ +K+YANSHYVTPRPTL  AIK+IK E+ QRL +L   GRLLEAQRLEQRT +
Sbjct: 386 QKTGDLKSVKIYANSHYVTPRPTLNAAIKAIKEEMSQRLAELERAGRLLEAQRLEQRTRY 445

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           D+EM+EATGSC GIENYSRYLTG
Sbjct: 446 DIEMLEATGSCQGIENYSRYLTG 468