BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0042.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HP1191 [M] COG0859 ADP-heptose Hpy Helicobacter pylori 26695           75   4e-14
jhp1116 [M] COG0859 ADP-heptose jHp Helicobacter pylori J99            74   7e-14
RSc0565 [M] COG0859 ADP-heptose Rso Ralstonia solanacearum             72   4e-13
Cj1148 [M] COG0859 ADP-heptose Cje Campylobacter jejuni                71   7e-13
PA5012 [M] COG0859 ADP-heptose Pae Pseudomonas aeruginosa              68   6e-12

>HP1191 [M] COG0859 ADP-heptose Hpy Helicobacter pylori 26695
          Length = 349

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 1   MAAASVAVTNDSGLMHIAAAIGTPTMGIFGPTDPYLWAPLNGLAATVLQTRSKLSCQPCQ 60
           +A   + +TNDSG MH+AA++ TP + +FGPTD     P       VL     LSC PC+
Sbjct: 258 IAVLDLFITNDSGPMHVAASMQTPLIALFGPTDEKETRPYKAQKTIVLN--HHLSCAPCK 315

Query: 61  RTVCTM---NDHRCMRDIAPEEVVEIAQRVLAQ 90
           + VC +    +H CM+ I P EV+E A  +L +
Sbjct: 316 KRVCPLKNAKNHLCMKSITPLEVLEAAHTLLEE 348


>jhp1116 [M] COG0859 ADP-heptose jHp Helicobacter pylori J99
          Length = 349

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 1   MAAASVAVTNDSGLMHIAAAIGTPTMGIFGPTDPYLWAPLNGLAATVLQTRSKLSCQPCQ 60
           +A   + +TNDSG MH+AA+  TP + +FGPTD     P     A VL     LSC PC+
Sbjct: 258 IAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLN--HHLSCAPCK 315

Query: 61  RTVCTM---NDHRCMRDIAPEEVVEIAQRVLAQ 90
           + VC +    +H CM+ I P EV++ A  +L +
Sbjct: 316 KRVCPLKNEKNHLCMKSITPLEVLQAAHTLLEE 348


>RSc0565 [M] COG0859 ADP-heptose Rso Ralstonia solanacearum
          Length = 341

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 1   MAAASVAVTNDSGLMHIAAAIGTPTMGIFGPTDPYLWAPLNGLAATVLQTRSKLSCQPCQ 60
           +A A  A+ NDSGLMH+ AA+G P + +FG +DP    PL+  AA+++     L C PC 
Sbjct: 254 LARAEAAICNDSGLMHVTAALGRPQVAVFGSSDPRHTPPLSP-AASIMWL--HLECSPCF 310

Query: 61  RTVCTMNDHRCMRDIAPEEVVEIAQRVLAQI 91
              C +   RC+RDI PE V    +R+L  +
Sbjct: 311 ARECPLGHLRCLRDIGPEMVFHELRRLLQPV 341


>Cj1148 [M] COG0859 ADP-heptose Cje Campylobacter jejuni
          Length = 319

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 1   MAAASVAVTNDSGLMHIAAAIGTPTMGIFGPTDPYLWAPLNGLAATVLQTRSKLSCQPCQ 60
           +A   + +TNDSG MH++A     T+ IFGPT     +P     A ++     L+C PC 
Sbjct: 229 IAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHL--DLACMPCM 286

Query: 61  RTVCTMNDHRCMRDIAPEEVVEIAQRVL 88
           +  C +  H+CM+D+ PE+V+E A+ +L
Sbjct: 287 QKTCPLKHHKCMKDLKPEKVIEQAKNLL 314


>PA5012 [M] COG0859 ADP-heptose Pae Pseudomonas aeruginosa
          Length = 345

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 1   MAAASVAVTNDSGLMHIAAAIGTPTMGIFGPTDPYLWAPLNGLAATVLQTRSKLSCQPCQ 60
           M+ A   V+NDSGLMH+AAA+  P +G++G T P    P   LA  V   R  L C PC 
Sbjct: 253 MSCAGAVVSNDSGLMHVAAALDRPLVGVYGSTSPQFTPP---LADRVEIVRLGLECSPCF 309

Query: 61  RTVCTMNDHRCMRDIAPEEVVEIAQRVLA 89
              C    + C+R++ P  V++  +R++ 
Sbjct: 310 ERTCRFGHYNCLRELPPGLVLQALERLVG 338