BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0040.p (336 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02252 [M] COG1087 UDP-glucose 4-epimerase Sme Sinorhizobium m... 384 e-106 AGc938 [M] COG1087 UDP-glucose 4-epimerase Atu Agrobacterium tum... 377 e-104 mlr5697 [M] COG1087 UDP-glucose 4-epimerase Mlo Mesorhizobium loti 369 e-102 aq_1069 [M] COG1087 UDP-glucose 4-epimerase Aae Aquifex aeolicus 326 6e-89 slr1067 [M] COG1087 UDP-glucose 4-epimerase Syn Synechocystis 306 4e-83 >SMc02252 [M] COG1087 UDP-glucose 4-epimerase Sme Sinorhizobium meliloti Length = 342 Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/336 (57%), Positives = 239/336 (71%), Gaps = 2/336 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 M VLVTGGAGYIGSHMV +L+D GE+VVV+D LSTGF + + GD GD L++ Sbjct: 1 MAVLVTGGAGYIGSHMVWSLLDGGEAVVVLDCLSTGFRWAVAPEARFYFGDVGDRALLQR 60 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAA-XGGVSRFIFSSTAAV 119 V A++ IDS++HFAGS VVP+S+ +PL YY NNT TR+L+ A G+ F+FSSTAAV Sbjct: 61 VFAENEIDSVVHFAGSAVVPESVANPLAYYENNTANTRTLIAATVEAGIRHFVFSSTAAV 120 Query: 120 YGNPDQV-PVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGR 178 YG D PV E A RP SPYG SKLM+E+ML D A+AH +V LRYFNVAGADP GR Sbjct: 121 YGTQDTPDPVSETAALRPQSPYGRSKLMSEMMLQDAAAAHDFRFVALRYFNVAGADPLGR 180 Query: 179 AGLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSY 238 AG +T+GATHL+K+A EAA G+R KIDV GTDYPT DG+ +RD+IHVSDLV AHRSAL+Y Sbjct: 181 AGQSTLGATHLIKVACEAALGRRRKIDVLGTDYPTADGTGVRDYIHVSDLVAAHRSALAY 240 Query: 239 LRAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSL 298 LRAGG+ + NCGYG G+SVL+ ++ VR+VS R+F V YA RRPGD +VAD + Sbjct: 241 LRAGGEPLVANCGYGHGFSVLQVLDTVRQVSGRDFMVDYAPRRPGDPAQIVADPSVARLK 300 Query: 299 LDWTPRYDDLETIASHALAWEEKLFRERAGSARQAE 334 LDW P + LE I A WE L R+ + Q E Sbjct: 301 LDWVPTHASLEHIVRSAFDWESHLSRKNSFDEEQDE 336 >AGc938 [M] COG1087 UDP-glucose 4-epimerase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 343 Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/330 (57%), Positives = 242/330 (73%), Gaps = 2/330 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 M VLVTGGAGYIGSHMV AL+DAGE VVV+D LSTG + ++GDA D L++ Sbjct: 1 MAVLVTGGAGYIGSHMVWALLDAGEEVVVVDRLSTGSRWAVAPAARFYLGDAADRALLDQ 60 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAX-GGVSRFIFSSTAAV 119 V ++ I++I HFAGSV VP+S+ PL YY NNT TTR+L+ AA G+ FIFSSTAAV Sbjct: 61 VFEENHIETIFHFAGSVSVPESISQPLEYYENNTGTTRALVAAAVRSGIRNFIFSSTAAV 120 Query: 120 YGN-PDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGR 178 YGN P PVPE A P +PYG SKL +EIML DV AH +YV LRYFNVAGADP+GR Sbjct: 121 YGNQPFDGPVPETAILSPENPYGLSKLASEIMLRDVVQAHDFNYVALRYFNVAGADPQGR 180 Query: 179 AGLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSY 238 AG + G +L+K+A EAATG+R +++V+GTDYPT DG+ +RD+IHVSDL++AH A+++ Sbjct: 181 AGPSPTGVANLIKVACEAATGRRDRVEVYGTDYPTADGTGVRDYIHVSDLIDAHMLAMAH 240 Query: 239 LRAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSL 298 LRAGG + T+NCGYG GYSVL+ ++AV+R S FAV + RRPGDI MVAD++RI S Sbjct: 241 LRAGGGTRTLNCGYGVGYSVLDVLQAVQRESACEFAVIHCPRRPGDIAAMVADSSRIQSE 300 Query: 299 LDWTPRYDDLETIASHALAWEEKLFRERAG 328 L W PR++DL TI AL WE K +++G Sbjct: 301 LGWRPRFNDLATIVRTALQWEAKRQAQQSG 330 >mlr5697 [M] COG1087 UDP-glucose 4-epimerase Mlo Mesorhizobium loti Length = 333 Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/323 (58%), Positives = 225/323 (69%), Gaps = 1/323 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 MTVLVTGGAGYIGSHMV L+DAGE VVV+D LSTGF + L +GD D+ LV Sbjct: 3 MTVLVTGGAGYIGSHMVWELLDAGERVVVLDRLSTGFEWAVAPEAKLVVGDVADKELVGS 62 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAX-GGVSRFIFSSTAAV 119 +I + +D+IIHFAGS+VVP+S+ DPL YY NNT TR+L+ A GV FIFSSTAAV Sbjct: 63 IIRDNHVDAIIHFAGSIVVPESVADPLAYYENNTSKTRTLIETAVREGVPHFIFSSTAAV 122 Query: 120 YGNPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRA 179 YG PV E A P SPYG SKLM+E ML D AH + Y LRYFNVAGADPKGR Sbjct: 123 YGGAGLEPVREDARLAPESPYGLSKLMSEWMLRDAGLAHDIRYTALRYFNVAGADPKGRT 182 Query: 180 GLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYL 239 G +T GATHL+K+A E A G+R + VFGTDYPT DG+C+RD+IHVSDL AHR AL L Sbjct: 183 GQSTPGATHLIKVACETALGKRPFMQVFGTDYPTPDGTCMRDYIHVSDLAAAHRLALQRL 242 Query: 240 RAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLL 299 RAGG S+ NCGY GYSVLE I++VRR R+F V RRPGD +VA++ + L Sbjct: 243 RAGGTSLVANCGYSHGYSVLEVIDSVRRAFGRDFEVKMGDRRPGDAAAVVANSDLARAEL 302 Query: 300 DWTPRYDDLETIASHALAWEEKL 322 WTP+ DDL+ I + ALAWE L Sbjct: 303 GWTPQRDDLDQIVADALAWERIL 325 >aq_1069 [M] COG1087 UDP-glucose 4-epimerase Aae Aquifex aeolicus Length = 327 Score = 326 bits (835), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 161/322 (50%), Positives = 218/322 (67%), Gaps = 3/322 (0%) Query: 3 VLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEGVI 62 VLVTGGAGYIGSH+V AL + G V++ DNLSTG + G L D D+ + V Sbjct: 4 VLVTGGAGYIGSHVVKALGEKGYEVLIYDNLSTGNEWAVLYG-KLVKADLADKETLRRVF 62 Query: 63 AQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAXG-GVSRFIFSSTAAVYG 121 + D+++HFA +VVP+S+++PL YYRNN + T +LL GV++F+FSS+AAVYG Sbjct: 63 EEFKPDAVMHFAAYIVVPESVKEPLKYYRNNVVNTINLLEVMQEFGVNKFVFSSSAAVYG 122 Query: 122 NPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVA-SAHGMSYVVLRYFNVAGADPKGRAG 180 P+ +PV E AP P++PYG +K E +L D+ S +YV LRYFNVAGADP+G+ G Sbjct: 123 IPESIPVKEDAPLNPINPYGETKATVERILRDLKNSGKDFNYVSLRYFNVAGADPEGKIG 182 Query: 181 LATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYLR 240 A THL+ AV+ A G+ +++++GTDYPT DG+CIRD+IHV+DL EAH AL YL Sbjct: 183 FAYPNPTHLIIRAVKTAAGEFDRLEIYGTDYPTPDGTCIRDYIHVTDLAEAHILALEYLF 242 Query: 241 AGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLLD 300 +GG+S +NCGYG GYSVLE + AV++V+ +F V A RR GD +VAD +I +L+ Sbjct: 243 SGGKSEVLNCGYGHGYSVLEVVNAVKKVTGVDFKVVEAPRREGDPPALVADNKKIKRVLN 302 Query: 301 WTPRYDDLETIASHALAWEEKL 322 W P+YDDLE I A WE+K Sbjct: 303 WEPKYDDLEFIIKTAWEWEKKF 324 >slr1067 [M] COG1087 UDP-glucose 4-epimerase Syn Synechocystis Length = 340 Score = 306 bits (785), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 154/320 (48%), Positives = 211/320 (65%), Gaps = 2/320 (0%) Query: 3 VLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEGVI 62 +LVTGGAGYIGS +V L +AG S+VV DN STGF + + G L IGD D + V Sbjct: 9 ILVTGGAGYIGSSVVRQLGEAGYSIVVYDNCSTGFPSSILYG-QLVIGDLADTERLHQVF 67 Query: 63 AQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAX-GGVSRFIFSSTAAVYG 121 +H I +++HFAGS++VP+S+ PL YY NNT T SL+ GV+R IFSSTAAVYG Sbjct: 68 HEHEILAVMHFAGSLIVPESLIHPLNYYANNTSNTLSLIRCCQIFGVNRLIFSSTAAVYG 127 Query: 122 NPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRAGL 181 N P+ E P++PYG SKL +E ++ D A + + YV+LRYFNVAGADP+GR G Sbjct: 128 NSSSNPISEAEIPCPINPYGRSKLASEWIIQDYAKSSALQYVILRYFNVAGADPEGRLGQ 187 Query: 182 ATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYLRA 241 + THL++ +A + +D+FGTD+PT+DG+ +RD+IHV DL +AH AL YL Sbjct: 188 MSKTTTHLVRSVCDAILNLKPSLDIFGTDFPTRDGTAVRDYIHVEDLAKAHLDALRYLEN 247 Query: 242 GGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLLDW 301 GG+S +NCGYG+GYSV E ++ + +S +F V RR GD +++A I +L+W Sbjct: 248 GGESQILNCGYGQGYSVREVVDRAKAISGVDFLVRETERRLGDPASVIACADSIRQVLNW 307 Query: 302 TPRYDDLETIASHALAWEEK 321 TP+Y++L+ I ALAWE K Sbjct: 308 TPKYNNLDIILRTALAWEIK 327