BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0023.p (273 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3333 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu... 217 3e-56 RSp0831 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso... 213 5e-55 SMc04145 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sm... 207 2e-53 AGl1767 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu... 185 1e-46 DRA0222 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Dra... 175 9e-44 >AGl3333 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 152/258 (58%), Gaps = 4/258 (1%) Query: 1 MPRILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAIC 60 M R+L+TGA+G +G +R+ L P+ L L+D+ G E+ DLAD V A+ Sbjct: 19 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMV 78 Query: 61 EGVDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRHH 120 G DGI+H GG SVE P++ ILQ NIIG YNL+EAAR G R++FASSNH +G+YP+ Sbjct: 79 AGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTE 138 Query: 121 RIGTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKP 180 R+G DV ARPD YGVSK FGE + +Y DK G + +RIG+ P ++R LS W Sbjct: 139 RLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLSTWFSH 198 Query: 181 EDLVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQA 240 +D V L P + V++GAS N+ WWDN LG++P AE FR H + Sbjct: 199 DDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDNSHLGFLGWKPKDNAEAFRRHIT--ET 256 Query: 241 KLPPDPVGDY--YQGGAF 256 PPDP +QGG F Sbjct: 257 TPPPDPNDALVRFQGGTF 274 >RSp0831 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso Ralstonia solanacearum Length = 282 Score = 213 bits (541), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 118/262 (45%), Positives = 153/262 (58%), Gaps = 1/262 (0%) Query: 3 RILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAICEG 62 R+L+TGA G +G LR+ L L +SDI E+ DLAD V+A+ +G Sbjct: 22 RLLLTGAGGNLGKVLRERLTRYAEVLRVSDITDLCAARAGEEVVPCDLADAQAVDALVKG 81 Query: 63 VDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRHHRI 122 VD I+H GG SVE P+D IL +NI G Y+L+EAAR+ GVKR+ FASSNHA+GFY + I Sbjct: 82 VDAIVHLGGISVERPFDEILPANIQGTYHLYEAARRHGVKRIAFASSNHAIGFYRQGEVI 141 Query: 123 GTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKPED 182 V RPD YG+SKVFGE +G+ Y D++GI+ +RIG+ D R L WL +D Sbjct: 142 DARVPTRPDGYYGLSKVFGEQLGSFYFDRYGIETVAIRIGSSFPEAKDRRMLVTWLGYDD 201 Query: 183 LVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQAKL 242 L QL R L P++ F ++YG S N +WWDN A LGY P +E FR A+ Sbjct: 202 LEQLIRRALFVPNVGFTIVYGMSGNREAWWDNRHAAHLGYVPAQSSEAFRAQVEAQPPLA 261 Query: 243 PPDPVGDYYQGGAFCSMEFDGD 264 DP +QGGAF GD Sbjct: 262 ADDPAAR-FQGGAFVKAGPFGD 282 >SMc04145 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme Sinorhizobium meliloti Length = 261 Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/261 (44%), Positives = 153/261 (58%), Gaps = 3/261 (1%) Query: 3 RILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAICEG 62 R+L+TGA+GG+G R+ L L LSD+ S G E+ DLA+ V+ + G Sbjct: 4 RLLITGAAGGLGRYAREGLKGCADVLRLSDVATLSPAGEGEEIVRCDLAEREAVDQLVRG 63 Query: 63 VDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRHHRI 122 D ILH G SVE +DA+LQ+NI+G YNL+EAARK GV R++FAS+NH GF+P + Sbjct: 64 CDAILHLGAISVESDFDALLQANILGTYNLYEAARKAGVNRILFASTNHVTGFHPIGETL 123 Query: 123 GTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKPED 182 RPDS YGVSK FGE + LY DK+G++ CLRIG+ P + R LS WL P D Sbjct: 124 DHLSPRRPDSLYGVSKCFGEDLSRLYFDKYGMETACLRIGSCFAEPTNRRMLSTWLSPRD 183 Query: 183 LVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQAKL 242 + L R L+ P I VLYG S N WW N A LG+RP +E +R H + ++ + Sbjct: 184 FLALVRRLLDAPKIGHLVLYGVSANRDVWWSNGHADFLGWRPQDSSEPYR-HEIEKREEE 242 Query: 243 PPDPVGDYYQGGAFCSMEFDG 263 P D G YQGG + + G Sbjct: 243 PSD--GVRYQGGRHAAAKLPG 261 >AGl1767 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 265 Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/256 (38%), Positives = 142/256 (55%) Query: 1 MPRILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAIC 60 + R+L+TGA G +G+ LR L + + LSD+ +E+ + L D V + Sbjct: 2 LKRLLITGAGGKLGSMLRGRLGHVAQTIRLSDVVDLGSASPHEELVSCALEDEQAVHDLV 61 Query: 61 EGVDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRHH 120 +G DGI+H GG SVE +D I +N+ G YNL+EAAR G+ R++FASSNH +G+YP+ Sbjct: 62 KGCDGIVHLGGVSVERAFDPIEAANLRGVYNLYEAARLNGMPRILFASSNHTIGYYPQGQ 121 Query: 121 RIGTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKP 180 ++ D PD YGVSK+FGE + +LY K G + +RIG+ E P + R LS WL Sbjct: 122 QLAPDTPFLPDGLYGVSKIFGEAMASLYHSKFGQETAIVRIGSCEEKPSNWRMLSTWLSH 181 Query: 181 EDLVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQA 240 D V L P + V++G S N+ SWWDN LG++ A D+R + + Sbjct: 182 GDFVSLIEATFRAPKLGCPVIWGVSANDDSWWDNSHVDFLGWQRRDNAADYRAEIERDVS 241 Query: 241 KLPPDPVGDYYQGGAF 256 + P+ YQGG F Sbjct: 242 RPDPEAAIAKYQGGIF 257 >DRA0222 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Dra Deinococcus radiodurans Length = 288 Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 108/271 (39%), Positives = 147/271 (54%), Gaps = 12/271 (4%) Query: 3 RILMTGASGGIGTSLRKLLP-PI---YPDLLLSDIKQPSDLGGY---EKFKAADLADLAE 55 R+L+TGA+G +G++LR+LL P+ +P + L+D + DLG E+ ADL D Sbjct: 5 RLLITGAAGEVGSALRELLRGPLGQHFPIIRLTDNR---DLGAARPGEEVMLADLTDFNA 61 Query: 56 VEAICEGVDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGF 115 V + +GVD ++H G E + I NI G Y++ EAAR+ GV+RV FASS H VGF Sbjct: 62 VLKVMQGVDAVIHLAGIPDEDSYANIRAVNIDGTYHVLEAARQAGVRRVAFASSIHTVGF 121 Query: 116 YPRHHRIGTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLS 175 YPR I V RPD+ YGVSKVFGE +G +Y +++G++ +RI +F P D R LS Sbjct: 122 YPRTEIISPTVPVRPDTYYGVSKVFGEALGRMYWERYGLEFVGVRICSFQPRPKDRRHLS 181 Query: 176 IWLKPEDLVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHA 235 WL P D QL + PD+ F V+ G S N R W LGY P AE F A Sbjct: 182 TWLSPRDATQLFARAVTAPDVGFLVVAGISGNTRRWMSPEGWDVLGYVPQDDAERF--AA 239 Query: 236 MAEQAKLPPDPVGDYYQGGAFCSMEFDGDKE 266 E + + QGG F + G + Sbjct: 240 EVEHIHGNEGDITEQRQGGIFVDAHYHGRAQ 270