BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0021.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr2114 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 261 8e-70 AGl1259 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 74 4e-13 SMb20129 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 71 2e-12 mlr8380 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 69 7e-12 PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 68 1e-11 >mlr2114 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 223 Score = 261 bits (668), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 154/206 (74%) Query: 18 EQAEVIRRLEEDIIFGRFAPGLRLVEDTLMQRYGASRHFVRQALFQLERQGIVLREKNVG 77 ++A+ + LEEDIIFGR APG RLVED L+ R+ SRH +RQAL+QLER GIV RE+N G Sbjct: 10 KEADTVHALEEDIIFGRLAPGTRLVEDVLLARFPVSRHTIRQALYQLERLGIVTRERNKG 69 Query: 78 ATVRFYSAEEVRQIYEVREMLTRQAALMIALPAPQSLIDQLSELQRHYSTKAEAQDMRGI 137 A VR S EEVRQIYEVREML RQAALMI LP ++LI QL E+ R YS +A +RGI Sbjct: 70 AMVRRLSPEEVRQIYEVREMLQRQAALMIPLPVSEALIAQLEEIHRIYSGHVDAGYLRGI 129 Query: 138 HETNDAFHLALFSACGNPYLVRSLQDYMNLTLPMRAKNLADSEGLALSRRQHELMIELLK 197 HE ND FHL +FSACGN YLV S++ YM L+LP+RA +LAD E L +SR+ H +MIE LK Sbjct: 130 HEANDRFHLTMFSACGNAYLVSSIEHYMRLSLPVRANSLADREKLDVSRQHHAMMIEALK 189 Query: 198 GRDGWALAQLCVDHMQYSKADYLVRI 223 RD W LAQLCVDH+Q SK YL I Sbjct: 190 RRDNWVLAQLCVDHLQPSKVFYLQEI 215 >AGl1259 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 16/201 (7%) Query: 25 RLEEDIIFGRFAPGLRLVEDTLMQRYGASRHFVRQALFQLERQGIVLREKNVGATVRFYS 84 ++ + I+ G F PG RLVE L + G SR VR+ L LE +G+V N G V Sbjct: 40 KVRDAIVNGYFRPGDRLVERELCAQLGVSRTIVREVLRHLESEGLVANLPNKGPMVALLD 99 Query: 85 AEEVRQIYEVREMLTRQAALMIALPAPQSLIDQLSELQRHYSTKAEAQDMRGIHETNDAF 144 +E +QIYE+R L AA + A ++++ L R A+DM G+ +F Sbjct: 100 LDEAKQIYEIRGALEGMAARLCAERRDPAIVEALEVSLRRIRESYVAKDMPGVLTHTSSF 159 Query: 145 HLALFS------ACG--NPYLVRSLQDYMNLTLPMRAKNLADSEGLALSRRQHELMIELL 196 + LFS A G N VR + ++T+ +++ D++G A Q E +++ + Sbjct: 160 YQTLFSKIDRHVAWGVVNLLTVR-INHLRSMTIKTKSR---DTDGPA----QMEKIVDAI 211 Query: 197 KGRDGWALAQLCVDHMQYSKA 217 + DG A + +DH+ + A Sbjct: 212 RKGDGDAAYKAALDHVTSACA 232 >SMb20129 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 259 Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 19/215 (8%) Query: 8 PELQAPSREEEQAEVIRRLEEDIIFGRFAPGLRLVEDTLMQRYGASRHFVRQALFQLERQ 67 P A S E + V++ + E I+ R APG RL+E L GASR +R L +L Sbjct: 15 PAGAAMSGPEAEQRVVQVIVEAIMHHRVAPGARLIERELAIASGASRSAIRNGLMRLAHA 74 Query: 68 GIVLREKNVGATVRFYSAEEVRQIYEVREMLTRQAALMIALPAPQSLIDQLSELQRHYST 127 G+V N GA++ S +E RQI++ R ++I + L + E +R Sbjct: 75 GLVELSPNKGASIAMCSPDEARQIFDAR--------IVIETATVEKLAGTIGETER-ARL 125 Query: 128 KAEAQDMRGIHETNDA---------FHLALFSACGNPYLVRSLQDYMNLTLPMRAKNLAD 178 ++ +D R +E FHL L GN L ++D +N P+ + + D Sbjct: 126 RSFVEDERNAYEEGRMEEARHLSRRFHLLLAEMAGNDVLTGVIRDLINRQ-PLLSWSRPD 184 Query: 179 SEGLALSRRQHELMIELLKGRDGWALAQLCVDHMQ 213 +E H ++E + DG A+L ++H++ Sbjct: 185 TEPRFCGNHAHSEIVEAIASGDGERAARLNMEHLR 219 >mlr8380 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 372 Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 4/207 (1%) Query: 22 VIRRLEEDIIFGRFAPGLRLVEDTLMQRYGASRHFVRQALFQLERQGIVLREKNVGATVR 81 V R+L E I+ PG +L E + R+GASR VR AL +LE +G+V R+ G TV Sbjct: 158 VERQLREMILGLEIGPGEKLTERWIEGRFGASRTPVRAALLRLETEGLVGRDGR-GWTVS 216 Query: 82 FYSAEEVRQIYEVREMLTRQAALMIALPAPQSLIDQLSELQRHYSTKAEAQDMRGIHETN 141 + E+ QI RE + A + + A S ID + + ++ H Sbjct: 217 PINLAELEQIAVYREAVEVAAVRLTCMHAESSAIDVIEAMLDSCDQNTPREEW---HRVG 273 Query: 142 DAFHLALFSACGNPYLVRSLQDYMNLTLPMRAKNLADSEGLALSRRQHELMIELLKGRDG 201 FH+ L GN +L R+++D M R + D L + +H ++ + D Sbjct: 274 MDFHIELARLSGNEFLFRAVRDAMTRLSRARWLEVRDEAALGRAWAEHRAILAAARLGDA 333 Query: 202 WALAQLCVDHMQYSKADYLVRISNDKK 228 A+L H+ S+ + ++ND++ Sbjct: 334 DEAARLLCAHIVGSRDRLVTSLANDRR 360 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 2/163 (1%) Query: 1 MTAEPTLPELQAPSREEEQAEVIRRLEEDIIFGRFAPGLRLVEDTLMQRYGASRHFVRQA 60 MT P E+ E V R+++ I+ G APG ++ E L + YG SR +R+A Sbjct: 1 MTQNPPPLEIAHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREA 60 Query: 61 LFQLERQGIVLREKNVGATVRFYSAEEVRQIYEVREMLTRQAALMIALPAPQSLIDQLSE 120 + +LE +++R +VGA V S E+ ++YE+RE L A + A Q+ ID+L Sbjct: 61 IHRLEGLRLLVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRR 120 Query: 121 LQRHYSTKAEAQDMRGIH--ETNDAFHLALFSACGNPYLVRSL 161 + + Q RG + E + FH + GN L R L Sbjct: 121 VLDTHERDEAFQAGRGYYQQEGDYDFHYRIIQGSGNATLTRML 163