BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0013.p (399 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 413 e-115 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 404 e-112 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 403 e-112 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 402 e-112 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 108 2e-23 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/381 (50%), Positives = 265/381 (69%) Query: 19 AQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPTVLGKPIEIISADHQMKTD 78 A++SD V+IG+L D S D G S EAAKMA E+FG TVLG PIEII+ADHQ K D Sbjct: 21 AEISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPD 80 Query: 79 VGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKIALLSGPGASSLTDELCSPNT 138 V + R W+D +VD+++++ S + +AV + +E+ KI + +G S LT + C+P Sbjct: 81 VASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYG 140 Query: 139 VHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKDATRFINEMGGKVLGSVKH 198 H+AYDT+AL+ T +++++GG +W+F+TADYAFG LE+ T+F+ GGKVLGSV+H Sbjct: 141 FHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRH 200 Query: 199 PLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGEFGLVQGGQKLVGLLMFDTDV 258 PL+ D+SSF LQAQ+S A VV ANAG DT N+IKQ+ EFG+V GGQ+L LL +V Sbjct: 201 PLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAEV 260 Query: 259 HAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMPTMIQTGVYGSVLHYLKAIQA 318 H +GL AAQG +T YW+ D+++RA+ K+F+ R MP MIQ G Y +VL YLKAI+ Sbjct: 261 HGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIKE 320 Query: 319 AGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYLAKVKKPSESKEPWDYLDIVK 378 AGTD+ +AV K+ E+P+ED F GK+ +GR+I DMYL +VKKP ESK PWDY ++ Sbjct: 321 AGTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVLA 380 Query: 379 TVKGEDAYRPVSESKCPLLKK 399 T+ G+ AY ES CPL+K+ Sbjct: 381 TIPGDQAYMKPEESGCPLVKQ 401 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 186/380 (48%), Positives = 263/380 (69%) Query: 20 QVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPTVLGKPIEIISADHQMKTDV 79 ++SD V+IG+L D S + G S EAAKMAVE+FG VLG P+E+++ADHQ K DV Sbjct: 23 EISDGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADV 82 Query: 80 GVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKIALLSGPGASSLTDELCSPNTV 139 + R W+D +VD+++++ +S + +AV + +++ KI + +G + LT + CSP Sbjct: 83 ASNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGF 142 Query: 140 HFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKDATRFINEMGGKVLGSVKHP 199 H+AYDTY+L+ T A++K+GG SWFF+TADYAFG LE++ + F+ GGKVLGSV+HP Sbjct: 143 HWAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHP 202 Query: 200 LNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGEFGLVQGGQKLVGLLMFDTDVH 259 L D+SSF LQAQSS A V+ ANAG DT N+IKQ+ EFG+V GGQ+L LL +VH Sbjct: 203 LATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVH 262 Query: 260 AIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMPTMIQTGVYGSVLHYLKAIQAA 319 +GL AAQG +T YW+ D+++R + ++F R MP MI TG Y +VLHYLKAI+ A Sbjct: 263 GLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKA 322 Query: 320 GTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYLAKVKKPSESKEPWDYLDIVKT 379 GTDD AV M+E+P+ D F G + +GR+I DMYL +VKKP ESK+PWDY ++ T Sbjct: 323 GTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLAT 382 Query: 380 VKGEDAYRPVSESKCPLLKK 399 + G++A+ ++S CPL+K+ Sbjct: 383 IPGKEAFMDPTKSGCPLVKQ 402 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/399 (49%), Positives = 274/399 (68%), Gaps = 6/399 (1%) Query: 5 LAAALVAA----MTTAAHAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPT 60 LA AL+AA + AHAQVS D V+IG +TDLS D G G VEA KMA+E+ G Sbjct: 6 LAGALMAAGLGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGK 65 Query: 61 VLGKPIEIISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKIAL 120 VLGKPIE+++ADHQ K D+ R W D +D +V NS ++A+ + E+ ++ + Sbjct: 66 VLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFI 125 Query: 121 LSGPGASSLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKD 180 G G + LT+E C+P T+H+AYDT AL+K T SAV+K+GGKSWFF+TADYAFG LE D Sbjct: 126 GIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLEND 185 Query: 181 ATRFINEMGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGEFG 240 + GG V+GSVKHPL+ +DFSS+ LQAQ+SKA ++ ANAG DT NSIK + EFG Sbjct: 186 TAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFG 245 Query: 241 LVQGGQKLVGLLMFDTDVHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMPTM 300 + + K+ GLLMF DVH++GL A+G MT + YW+M++ TR ++ +++++ MP+ Sbjct: 246 ITK-TMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSS 304 Query: 301 IQTGVYGSVLHYLKAIQAAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYLAK 360 +Q Y +V +Y+KA+ AAGTDDP V+A++++ + D F G +R DGR + DMYL + Sbjct: 305 LQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLND-FFSKGTIRADGRYVHDMYLMQ 363 Query: 361 VKKPSESKEPWDYLDIVKTVKGEDAYRPVSESKCPLLKK 399 VK P+ESK+PWDY+ IV T+ G+ A+ +ESKCPLLKK Sbjct: 364 VKTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLKK 402 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust. Identities = 189/391 (48%), Positives = 267/391 (68%) Query: 8 ALVAAMTTAAHAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPTVLGKPIE 67 A+V A +TAA A SD V+IG+L D S D G S EAA MAVE+FG VLG P+E Sbjct: 10 AMVLAGSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFGGKVLGVPVE 69 Query: 68 IISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKIALLSGPGAS 127 +++ADHQ K D+ + R W+D +VD+++++ S +A+AV + +E+ KI +++G + Sbjct: 70 VVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVTGAATT 129 Query: 128 SLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKDATRFINE 187 LT + CSP H+AYDT++L+ T A++K+GG SWFF+TADYAFG LE++ ++ E Sbjct: 130 ELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTGNYVKE 189 Query: 188 MGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGEFGLVQGGQK 247 GG V+G+V+HPL DFSSF LQAQSS A V+ ANAG DT N+IKQ+ EFG+VQGGQ+ Sbjct: 190 NGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIVQGGQR 249 Query: 248 LVGLLMFDTDVHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMPTMIQTGVYG 307 L LL +VH +GL+AAQG +T YWN DE++ + K+F R MP M+ G Y Sbjct: 250 LAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMVHAGTYS 309 Query: 308 SVLHYLKAIQAAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYLAKVKKPSES 367 +VL YLKAI+ AGTD+ +AV ++ LP++D F G + +GR+I DMYL +VKKP ES Sbjct: 310 AVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEVKKPDES 369 Query: 368 KEPWDYLDIVKTVKGEDAYRPVSESKCPLLK 398 KEPWDY ++ T+ G++A+ ++S C L+K Sbjct: 370 KEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 2/197 (1%) Query: 47 VEAAKMAVEEFGPT--VLGKPIEIISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGI 104 V A++AV + +LG+PIE++ D GVQ R + +V ++ NSGI Sbjct: 60 VTGARLAVAQINARGGILGRPIELLVEDSANDVGTGVQKARKLIERDQVSFLIGDVNSGI 119 Query: 105 AIAVHNMVRERNKIALLSGPGASSLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSW 164 A A+ + E+ + ++SG ++T C N T + A+ + + GK W Sbjct: 120 AQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCNTTSMEANAVANLLFSKYGKKW 179 Query: 165 FFVTADYAFGQQLEKDATRFINEMGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFAN 224 F+T DYAFG L+K A + ++GG + G+ PL DFS++ ++A+++ DV+ Sbjct: 180 HFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPLGTTDFSAYLIKARAANPDVLLVLP 239 Query: 225 AGQDTDNSIKQSGEFGL 241 G D N +KQ +FG+ Sbjct: 240 QGSDMVNCLKQIAQFGI 256