BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0011.p         (77 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2243 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f...    91   6e-19
Rv3537 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f...    82   2e-16
MT3641 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f...    82   2e-16
Cgl2581 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ...    75   3e-14
Cgl2564 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ...    64   8e-11

>PA2243 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Pae Pseudomonas aeruginosa
          Length = 577

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 50/66 (75%)

Query: 4   GDLGTNPGIRTDANARALDADGQPIAALYAAGNDMASIMGGNYPGAGITLGPALTFGYIA 63
           G  GT  G++TDA AR LD  GQPI  LYAAG DMAS+  G+YP  GI LGPALTFGYIA
Sbjct: 500 GCFGTFAGLKTDAQARVLDGGGQPIPGLYAAGADMASLFAGHYPSGGINLGPALTFGYIA 559

Query: 64  GKHIAG 69
           G+HIAG
Sbjct: 560 GRHIAG 565


>Rv3537 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Mtu Mycobacterium tuberculosis
           H37Rv
          Length = 563

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 49/70 (70%)

Query: 1   MVIGDLGTNPGIRTDANARALDADGQPIAALYAAGNDMASIMGGNYPGAGITLGPALTFG 60
           MV GDLGT  GIRTD N RAL  DG  I  LYAAGN  A +MG  YPG G T+GPA+TFG
Sbjct: 490 MVPGDLGTKGGIRTDVNGRALRDDGSIIDGLYAAGNVSAPVMGHTYPGPGGTIGPAMTFG 549

Query: 61  YIAGKHIAGE 70
           Y+A  HIA +
Sbjct: 550 YLAALHIADQ 559


>MT3641 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit MtC Mycobacterium tuberculosis
           CDC1551
          Length = 566

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 49/70 (70%)

Query: 1   MVIGDLGTNPGIRTDANARALDADGQPIAALYAAGNDMASIMGGNYPGAGITLGPALTFG 60
           MV GDLGT  GIRTD N RAL  DG  I  LYAAGN  A +MG  YPG G T+GPA+TFG
Sbjct: 493 MVPGDLGTKGGIRTDVNGRALRDDGSIIDGLYAAGNVSAPVMGHTYPGPGGTIGPAMTFG 552

Query: 61  YIAGKHIAGE 70
           Y+A  HIA +
Sbjct: 553 YLAALHIADQ 562


>Cgl2581 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Cgl Corynebacterium glutamicum
          Length = 563

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 44/68 (64%)

Query: 1   MVIGDLGTNPGIRTDANARALDADGQPIAALYAAGNDMASIMGGNYPGAGITLGPALTFG 60
           +V G  GT  GI+ D  +R L  D   I  LY AGND ASIMGG YP  GI LGPAL FG
Sbjct: 494 VVPGSFGTFDGIKADGKSRVLRDDDTIIDGLYTAGNDRASIMGGFYPAGGINLGPALAFG 553

Query: 61  YIAGKHIA 68
           YIAGK +A
Sbjct: 554 YIAGKELA 561


>Cgl2564 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Cgl Corynebacterium glutamicum
          Length = 320

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%)

Query: 6   LGTNPGIRTDANARALDADGQPIAALYAAGNDMASIMGGNYPGAGITLGPALTFGYIAGK 65
           L T  GI  + N + +  DG+PI  LY+AGND  S+M   YPGAG  +G  +TFG+IA +
Sbjct: 240 LATAFGISINPNGQVVSEDGEPIIGLYSAGNDAQSVMASEYPGAGSQVGSGMTFGWIAAQ 299

Query: 66  HIAGE 70
           H  G+
Sbjct: 300 HAVGK 304