BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0011.p         (317 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing protei...    80   6e-15
ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing prot...    80   6e-15
eutR [K] COG2207 AraC-type DNA-binding domain-containing protein...    78   3e-14
STM2454 [K] COG2207 AraC-type DNA-binding domain-containing prot...    77   7e-14
RSc1832 [K] COG2207 AraC-type DNA-binding domain-containing prot...    72   2e-12

>ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ
           Escherichia coli O157:H7 EDL933
          Length = 350

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%)

Query: 208 SAMRLVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCM 267
           S  RL+    +Y+    + PV V ++C +L +SRR+L  AFH + G+GP  +L+  RL  
Sbjct: 237 SYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNA 296

Query: 268 IRSILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQTL 313
           +R  L       TTV   A++ GF  LG+F+  Y+ +F E PS TL
Sbjct: 297 VRRELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTL 342


>ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs
           Escherichia coli O157:H7
          Length = 350

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%)

Query: 208 SAMRLVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCM 267
           S  RL+    +Y+    + PV V ++C +L +SRR+L  AFH + G+GP  +L+  RL  
Sbjct: 237 SYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNA 296

Query: 268 IRSILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQTL 313
           +R  L       TTV   A++ GF  LG+F+  Y+ +F E PS TL
Sbjct: 297 VRRELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTL 342


>eutR [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco
           Escherichia coli K12
          Length = 350

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%)

Query: 208 SAMRLVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCM 267
           S  RL+    +Y+    + PV V ++C +L +SRR+L  AFH + G+GP  +L+  RL  
Sbjct: 237 SYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNA 296

Query: 268 IRSILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQTL 313
           +R  L        TV   A++ GF  LG+F+  Y+ +F E PS TL
Sbjct: 297 VRRELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTL 342


>STM2454 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sty
           Salmonella typhimurium LT2
          Length = 350

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%)

Query: 211 RLVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCMIRS 270
           RL+    +Y+    + P+ V ++C +L +SRR+L  AFH + G+GP  +L+  RL  +R 
Sbjct: 240 RLLSRAREYVLENMSEPLTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRR 299

Query: 271 ILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQTL 313
            L        TV   A++ GF  LG+F+  Y+ +F E PS TL
Sbjct: 300 ELISPWSQSATVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTL 342


>RSc1832 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso
           Ralstonia solanacearum
          Length = 342

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 211 RLVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCMIRS 270
           R VR  +DYL A    PV   ++   + +S RSL+  F E  GV P+ +LR  R+   R+
Sbjct: 239 RHVRRAQDYLQAHAHEPVCADQLAQVVGVSVRSLYTGFKEFLGVSPMHYLRDLRMERTRT 298

Query: 271 ILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQTL 313
            L     + T V+ VA+  GF  +GRFS  Y+  +GE PSQTL
Sbjct: 299 ELMSG--EATNVAGVALRWGFAHMGRFSNDYKQRYGETPSQTL 339