BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0063.p (383 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 142 1e-33 mll3976 Non COG 139 1e-32 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 138 3e-32 SMc01950 [E] COG4177 ABC-type branched-chain amino acid transpor... 136 7e-32 BMEI0259 [E] COG4177 ABC-type branched-chain amino acid transpor... 135 1e-31 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 180/334 (53%), Gaps = 36/334 (10%) Query: 33 LIAPYVLSSYLMSQLVFVCIYATV-GVGLLILTGFTGQASLGHAAFLAIGAYTAAY---L 88 L+ P+V +SYL ++ + ++ GVGL +LTG+ GQ SLG AAF+A+GA+ AAY L Sbjct: 29 LVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAF-AAYNFDL 87 Query: 89 QQFNVPFPVYFLAAGLLTGVVGALVGFPALRLQGIYLVIATISFAFIVEEILARWESVTN 148 + +P V + AGL ++G + G P+LRL+G YL ++T++ F V+ L ++ ++N Sbjct: 88 RVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFSWLSN 147 Query: 149 GNEGMRVKTMQLLGTTVSRDGPTFYYLCLAVLVLTIVGTLN-----LLRSPTGRAFVAIR 203 + + L +S +GP YL LT V L L+ S TGR F+A+R Sbjct: 148 ESASGVIDAPALSLAGISFEGPVGRYL----FALTTVTALTFLAYRLVSSQTGRNFIAVR 203 Query: 204 DSETAARSMGINVALYKVKSFAISAAITGFAGVLFAHK-LSFISPEMFTLQLSIEFIIVI 262 D+ETAAR +G+ V K+ +FAIS+ I G AGV++A L + P F L S + + ++ Sbjct: 204 DNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFNLDRSFQILFIV 263 Query: 263 LIGGTFSLHGAVLGAIFLVMIDPFLTYLKDDMPGVIGGIAATLGAGTERAGHIQDAVAAF 322 +IGG S+ GA GA +V+ P V+ + + L +G + Sbjct: 264 IIGGLASIRGAFFGAALIVV-----------FPLVLSRLGSLLLGDVFDSGVL------- 305 Query: 323 ASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIK 356 + + + G +I+LF++ EP GL W ++K Sbjct: 306 ---DMTQRIVIGALIILFLILEPDGLVSLWDRLK 336 >mll3976 Non COG Length = 531 Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 28/283 (9%) Query: 27 LLLAVLLIAPYVLSSYLMSQLVFV-------CIYATVGVGLLILTGFTGQASLGHAAFLA 79 L++AVL + + ++ L L +V IY + GL I+ G G LG+ AF A Sbjct: 178 LVVAVLSLNAWSIAGGLQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYA 237 Query: 80 IGAYTAAYL-QQFNVPFPVYFLAAGLLTGVVGALVGFPALRLQGIYLVIATISFAFIVEE 138 +GAY A L + + F + AAG + + G L+GFP LRL+G YL I T++F I+ Sbjct: 238 LGAYAYALLATHYGLSFWILLPAAGCMAALWGVLLGFPVLRLRGDYLAIVTLAFGEIIRL 297 Query: 139 ILARWESVTNGNEGMR-VKTMQLLG-TTVSRDGPTF------------------YYLCLA 178 +L W VTNG+ G+ + + G T + P + YYL L Sbjct: 298 VLINWREVTNGSAGISGIPKVSFFGLMTFNVSDPNYIAKVLHLATSSAYYKIFLYYLILG 357 Query: 179 VLVLTIVGTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLF 238 + +LT T+ L R P GRA+ A+R+ E A RS+GIN K+ +FA A GFAG F Sbjct: 358 LCLLTAFVTIRLRRLPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGSFF 417 Query: 239 AHKLSFISPEMFTLQLSIEFIIVILIGGTFSLHGAVLGAIFLV 281 A + F+SPE F S + ++++GG SL G + A+ ++ Sbjct: 418 AARQGFVSPESFVFLESAIILAIVVLGGMGSLVGIAVAAMVMI 460 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 116/363 (31%), Positives = 188/363 (51%), Gaps = 28/363 (7%) Query: 4 LFKTDYEDDIKLFPHSGYIYSYGLLLAVLLIAPYVLSSYLMSQLVFVCIYATVGVGLLIL 63 +FK YE D+ +F + + + L + + AP+V+ Y ++ LV + I+ +GL I Sbjct: 9 VFKESYEADMAIFRYPIHWAALILAVVAAVAAPFVIGKYYLNLLVVMMIFWIAAIGLNIT 68 Query: 64 TGFTGQASLGHAAFLAIGAYTAAYLQ-QFNVPFPVYFLAAGLLTGVVGALVGFPALRLQG 122 G GQ SL HAA + IGAYT A V AGL ++G ++ P+ RL+ Sbjct: 69 LGLAGQISLAHAALMGIGAYTVANAALHLGVNSVAILPIAGLAAALLGIILSLPSFRLKE 128 Query: 123 IYLVIATISFAFIVEEILARWESVTNGNEGMRVKTMQLLGTTVSRDGPT-FYYLCLAVLV 181 YL +A+++ I+E + +R + + + +T LLG +++ PT YY LA+ V Sbjct: 129 YYLAMASLAAQLILEYVYSRIDP--DQYTPVPPETKTLLGISLTE--PTALYYFILAITV 184 Query: 182 LTIVGTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLFAHK 241 + + N+ RS GRA A+RD++ A+ ++GINV L K +FAI G AG L+A Sbjct: 185 VMALAAANIGRSSLGRAMKAVRDNDVASEAIGINVQLVKATAFAIGGFYAGVAGGLYAIY 244 Query: 242 LSFISPEMFTLQLSIEFIIVILIGGTFS-LHGAVLGAIFLVMIDPFLTYLKDDMPGVIGG 300 S I E FTL SIE + ++LIGG + G++LG LVM + T ++ + ++ G Sbjct: 245 SSGIGWEGFTLVNSIELLGMVLIGGPGRVVWGSLLGV--LVMRTGW-TMMESTITPLLAG 301 Query: 301 IAATLGAGTERAGHIQDAVAAFASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQ 360 I ++ A+ K + G +IV F++ EP GL ++K +F+ Sbjct: 302 IGLSI------------------IASSAKYIVLGFLIVAFIIAEPEGLIAVLRRVKEYFR 343 Query: 361 LFP 363 L+P Sbjct: 344 LWP 346 >SMc01950 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 461 Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 137/264 (51%), Gaps = 22/264 (8%) Query: 50 VCIYATVGVGLLILTGFTGQASLGHAAFLAIGAYTAAYLQQ-FNVPFPVYFLAAGLLTGV 108 + IY + GL I+ G G LG+ AF A+GAY+ A L F + F V AGLL Sbjct: 140 ILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYSYALLSSYFGLSFWVLLPIAGLLAAC 199 Query: 109 VGALVGFPALRLQGIYLVIATISFAFIVEEILARWESVTNGNEGMR-VKTMQLLGTT--V 165 G ++GFP LRL+G YL I T++F I+ +L W VT G G+ + L G Sbjct: 200 WGVVLGFPVLRLRGDYLAIVTLAFGEIIRLVLINWTEVTKGTFGVSGIAKATLFGIKFDA 259 Query: 166 SRDG-------PT--------FYYLCLAVLVLTIVGTLNLLRSPTGRAFVAIRDSETAAR 210 ++DG P +YL L + +LT T+ L R P GRA+ A+R+ E A R Sbjct: 260 TKDGFAAMMGLPMSSAYYKIFLFYLILGLALLTAFVTIRLRRMPIGRAWEALREDEIACR 319 Query: 211 SMGINVALYKVKSFAISAAITGFAGVLFAHKLSFISPEMFTLQLSIEFIIVILIGGTFSL 270 S+GIN K+ +FA A GFAG FA + F+SPE F S + ++++GG SL Sbjct: 320 SLGINTVTTKLTAFATGAMFGGFAGSFFAVRQGFVSPESFVFLESAVILAIVVLGGMGSL 379 Query: 271 HGAVLGAIFLV---MIDPFLTYLK 291 G + A+ ++ I LT+LK Sbjct: 380 TGIAIAAVVMIGGTEILRELTFLK 403 >BMEI0259 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 459 Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/253 (36%), Positives = 130/253 (51%), Gaps = 19/253 (7%) Query: 48 VFVCIYATVGVGLLILTGFTGQASLGHAAFLAIGAYTAAYLQQ-FNVPFPVYFLAAGLLT 106 V + IY + GL I+ G G LG+ AF A+GAY+ A L F + F V AGLL Sbjct: 136 VQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYSYAILSSYFGLSFWVLLPIAGLLA 195 Query: 107 GVVGALVGFPALRLQGIYLVIATISFAFIVEEILARWESVTNGN---EGMRVKTMQLLGT 163 G ++GFP LRL+G YL I T++F I+ +L W +T G G+ T L Sbjct: 196 ATWGIILGFPVLRLRGDYLAIVTLAFGEIIRLVLINWTDLTRGTFGISGIAKATFFGLPF 255 Query: 164 TVSRDGPT---------------FYYLCLAVLVLTIVGTLNLLRSPTGRAFVAIRDSETA 208 S+DG YY+ L + +LT T+ L R P GRA+ A+R+ E A Sbjct: 256 NASKDGFAAHFGLAFSAAHYKFFLYYVILLLALLTAWVTIRLRRMPVGRAWEALREDEIA 315 Query: 209 ARSMGINVALYKVKSFAISAAITGFAGVLFAHKLSFISPEMFTLQLSIEFIIVILIGGTF 268 RS+GIN K+ +FA A GFAG FA + F+SPE F S + ++++GG Sbjct: 316 CRSLGINTTTTKLTAFATGAMFGGFAGSFFAARQGFVSPESFVFLESAVILAIVVLGGMG 375 Query: 269 SLHGAVLGAIFLV 281 SL G + AI ++ Sbjct: 376 SLVGIAIAAIVMI 388