BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0062.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

APE1308 [E] COG0411 ABC-type branched-chain amino acid transport...   125   3e-29
SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ...   118   5e-27
alr2539 [E] COG0411 ABC-type branched-chain amino acid transport...   118   6e-27
DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ...   117   2e-26
PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ...   115   4e-26

>APE1308 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Ape Aeropyrum pernix
          Length = 250

 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 95/153 (62%)

Query: 7   ENLSLHFGGLKAVDAVSFAVEKGEILSIIGPNGAGKSSIFNLISRIYPPTSGKIFFEDQD 66
           EN++L FGG+ A+D VS  V +GEIL IIGPNGAGK+S+ N+I+ +Y P  G+++F+ +D
Sbjct: 5   ENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRD 64

Query: 67  ITQEPAYDIAKLGIARTFQNIELFENATVLSNLLVGRHRHSTTRLWQELLFLPSVRAGEK 126
           IT    +    LG++RTFQ+ ELF + TVL N++V  H  +   + ++ L+    +  E 
Sbjct: 65  ITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEV 124

Query: 127 AHRRRVEQVIEFLDLEPYRDKLISGLPCSTSRR 159
             R R E VI+ LDL  +R   I  LP    ++
Sbjct: 125 EARERAEHVIDLLDLHEHRHSPIGALPPGIQKK 157


>SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Spn Streptococcus pneumoniae TIGR4
          Length = 254

 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 92/159 (57%)

Query: 1   MSYFRAENLSLHFGGLKAVDAVSFAVEKGEILSIIGPNGAGKSSIFNLISRIYPPTSGKI 60
           M+    + L+ HFGGL AV  V+  + +GE++ +IGPNGAGK+++FNL++ +Y P+ G +
Sbjct: 1   MALLEVKQLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTV 60

Query: 61  FFEDQDITQEPAYDIAKLGIARTFQNIELFENATVLSNLLVGRHRHSTTRLWQELLFLPS 120
             +   +  +  Y IA LG+ RTFQNI LF++ TVL N+L+    H    ++   L LP+
Sbjct: 61  TLDGHLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKQHVFTSFLRLPA 120

Query: 121 VRAGEKAHRRRVEQVIEFLDLEPYRDKLISGLPCSTSRR 159
               EK  + +  ++++  DL+   + L   L     RR
Sbjct: 121 FYKSEKELKAKALELLKIFDLDGDAETLAKNLSYGQQRR 159


>alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Nos Nostoc sp. PCC 7120
          Length = 259

 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 90/138 (65%)

Query: 4   FRAENLSLHFGGLKAVDAVSFAVEKGEILSIIGPNGAGKSSIFNLISRIYPPTSGKIFFE 63
             A++L+  FGGL AV+ VSF V   EI  +IGPNGAGK+++FNLI+ + PP+SG++ ++
Sbjct: 10  LEAKSLTRRFGGLVAVNNVSFTVNHYEIFGLIGPNGAGKTTLFNLITALIPPSSGELIYQ 69

Query: 64  DQDITQEPAYDIAKLGIARTFQNIELFENATVLSNLLVGRHRHSTTRLWQELLFLPSVRA 123
           ++ I +   + IA LGIARTFQNI LF   + L N+++ RH H+ + ++  +L LP    
Sbjct: 70  NKAIAKLRPHQIASLGIARTFQNIRLFGELSALENVIIARHLHTKSTIFTGVLGLPPAPK 129

Query: 124 GEKAHRRRVEQVIEFLDL 141
            E   R +  +++E + L
Sbjct: 130 EESRSREKALELLEMVGL 147


>DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 259

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 7/147 (4%)

Query: 2   SYFRAENLSLHFGGLKAVDAVSFAVEKGEILSIIGPNGAGKSSIFNLISRIYPPTSGKIF 61
           +  +A N++  FGGL AV+ VSF V +GEI  +IGPNGAGK+++FNL++ + PP+SG + 
Sbjct: 10  AILQARNMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLT 69

Query: 62  FEDQDITQEPAYDIAKLGIARTFQNIELFENATVLSNLLVGRHRHSTTRLWQELLFLPSV 121
              Q +T    + +A LGI+RTFQNI LF   + L N+ V  HR +   LWQ +      
Sbjct: 70  SRGQTVTGLSPHRVAGLGISRTFQNIRLFRGLSALENVKVATHRQTHAGLWQGIF----- 124

Query: 122 RAGEKAHRRRVE-QVIEFLDLEPYRDK 147
              ++A  R+VE +  E LDL    D+
Sbjct: 125 -GADRAEERQVERRAWELLDLVGLSDR 150


>PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Pae Pseudomonas aeruginosa
          Length = 255

 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%)

Query: 9   LSLHFGGLKAVDAVSFAVEKGEILSIIGPNGAGKSSIFNLISRIYPPTSGKIFFEDQDIT 68
           L++ FGGL AV+ V+  VE+ +++S+IGPNGAGK+++FN ++  Y PT G I  + ++I 
Sbjct: 11  LTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRLDGEEIQ 70

Query: 69  QEPAYDIAKLGIARTFQNIELFENATVLSNLLVGRHRHSTTRLWQELLFLPSVRAGEKAH 128
             P + IA+ G+ RTFQN+ LF+  T + NLLV +HRH  T     L   P+ R  E+  
Sbjct: 71  GLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFRRSEREA 130

Query: 129 RRRVEQVIEFLDLEPYRDKLISGLPCSTSRR 159
                  +E ++L  + ++    L     RR
Sbjct: 131 MEYAAHWLEEVNLTEFANRSAGTLAYGQQRR 161