BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0061.p         (63 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ...    67   8e-12
FN1429 [E] COG0411 ABC-type branched-chain amino acid transport ...    67   8e-12
SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ...    67   9e-12
DR1035 [E] COG0411 ABC-type branched-chain amino acid transport ...    67   1e-11
mlr9038 Non COG                                                        67   1e-11

>TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Tma Thermotoga maritima
          Length = 284

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 45/59 (76%)

Query: 4   WIRDMKSELGITVLMVEHDMTLVNRVSDRIIALNYGRVLAMGSPSEVQHHPDVVAAYLG 62
           +I+ ++ +  +TVL++EHDM +V  + +RII ++YGR++A G+P E+Q+ P V+ AYLG
Sbjct: 220 FIKQIRKDFNLTVLLIEHDMKVVMGICERIIVMDYGRIIAEGTPKEIQNDPRVIEAYLG 278


>FN1429 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Fnu Fusobacterium nucleatum
          Length = 260

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 5   IRDMKSELGITVLMVEHDMTLVNRVSDRIIALNYGRVLAMGSPSEVQHHPDVVAAYLG 62
           I+ ++ + GI VL++EHDM LV  + +R++ LNYG++LA G P+EV ++P V+ AYLG
Sbjct: 198 IKLIRDKFGIAVLLIEHDMKLVLGICERLVVLNYGKILASGKPNEVINNPQVIEAYLG 255


>SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Spn Streptococcus pneumoniae TIGR4
          Length = 254

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 5   IRDMKSELGITVLMVEHDMTLVNRVSDRIIALNYGRVLAMGSPSEVQHHPDVVAAYLGA 63
           IR +K E  IT++++EHDM LV  V++RI  L YGR++A G+P E++ +  V+ AYLG 
Sbjct: 194 IRRIKDEFKITIMLIEHDMNLVMEVTERIYVLEYGRLIAQGTPDEIKTNKRVIEAYLGG 252


>DR1035 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 279

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 5   IRDMKSELGITVLMVEHDMTLVNRVSDRIIALNYGRVLAMGSPSEVQHHPDVVAAYLGA 63
           IR ++ ELG+TV+++EHDM LV  +S+ I  LNYG  LA G P E++++P+V+ AYLG+
Sbjct: 209 IRAIRDELGVTVVLIEHDMRLVMTLSENITVLNYGSKLAEGLPHEIRNNPEVMTAYLGS 267


>mlr9038 Non COG
          Length = 252

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 39/49 (79%)

Query: 14  ITVLMVEHDMTLVNRVSDRIIALNYGRVLAMGSPSEVQHHPDVVAAYLG 62
           +++L+VEHDM  V R+ DRI  LN+G+V+A G+P+E+  HPDV+ AYLG
Sbjct: 197 VSILLVEHDMRSVMRLCDRITVLNFGQVIAEGTPAEIGRHPDVIKAYLG 245