BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0060.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ...   160   8e-40
SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ...   156   1e-38
DR1034 [E] COG0410 ABC-type branched-chain amino acid transport ...   137   1e-32
RSc2437 [E] COG0410 ABC-type branched-chain amino acid transport...   135   3e-32
DR2118 [E] COG0410 ABC-type branched-chain amino acid transport ...   134   6e-32

>TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Tma Thermotoga maritima
          Length = 239

 Score =  160 bits (406), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 106/149 (71%)

Query: 4   ADIILKLSNIESYYGPIMAIRGISLEVPRGRIVTLLGANGAGKTTVLKTISGILDPQKGS 63
           +DI+L++ ++  YYG I AI+GI L+VPRG+IVTL+GANGAGKTT L  I+G++  QKG 
Sbjct: 2   SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 61

Query: 64  IEFLGKPIQRMEADRIVRLGLSHVPEGREVFPFLSVRENLMMGAYLRKDRDGVAQDLERV 123
           I F G+ I    A  I R+G++ VPEGR +FP L+V ENLMMGAY RKD++G+ +DLE +
Sbjct: 62  IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 121

Query: 124 YGYFPRLRERLGQPAGQLSAASSRCWRSG 152
           +  FPRL+ERL Q  G LS    +    G
Sbjct: 122 FSLFPRLKERLKQLGGTLSGGEQQMLAIG 150


>SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Spn Streptococcus pneumoniae TIGR4
          Length = 236

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 102/146 (69%)

Query: 7   ILKLSNIESYYGPIMAIRGISLEVPRGRIVTLLGANGAGKTTVLKTISGILDPQKGSIEF 66
           +LK+ N+  +YG I A+R +S EV  G +V+L+GANGAGKTT+L+T+SG++ P  G IEF
Sbjct: 3   MLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEF 62

Query: 67  LGKPIQRMEADRIVRLGLSHVPEGREVFPFLSVRENLMMGAYLRKDRDGVAQDLERVYGY 126
           LG+ IQ+M A +IV  GLS VPEGR VFP L+V ENL MGA+L+K+R+    +L++V+  
Sbjct: 63  LGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFSR 122

Query: 127 FPRLRERLGQPAGQLSAASSRCWRSG 152
           FPRL ER  Q A  LS    +    G
Sbjct: 123 FPRLEERKNQDAATLSGGEQQMLAMG 148


>DR1034 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 252

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 96/143 (67%)

Query: 7   ILKLSNIESYYGPIMAIRGISLEVPRGRIVTLLGANGAGKTTVLKTISGILDPQKGSIEF 66
           +L+L N+ SYYG I A++G+++ V  G IV L+G NGAGKTT L+TISG++ P+ GS+ +
Sbjct: 17  VLELQNVHSYYGQIEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKPKTGSVTY 76

Query: 67  LGKPIQRMEADRIVRLGLSHVPEGREVFPFLSVRENLMMGAYLRKDRDGVAQDLERVYGY 126
           LG+ +  + + +++  G++HVPEGR +FP ++VRENL +GAY   D+  +   +E  +  
Sbjct: 77  LGQNVTGVPSHQLIGRGMAHVPEGRRIFPQMTVRENLEVGAYTVNDKAAINARIEEGFEL 136

Query: 127 FPRLRERLGQPAGQLSAASSRCW 149
           FPRLRER  Q  G +S    +  
Sbjct: 137 FPRLRERESQLGGTMSGGEQQML 159


>RSc2437 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 244

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 97/142 (68%)

Query: 7   ILKLSNIESYYGPIMAIRGISLEVPRGRIVTLLGANGAGKTTVLKTISGILDPQKGSIEF 66
           +LK+S ++  YG I A++G+ LE+  G +VTL+GANGAGKTT +K I+G+     G +E+
Sbjct: 11  VLKISGLKVAYGGIQAVKGVDLEIADGELVTLIGANGAGKTTTMKAITGLQGWAGGDVEY 70

Query: 67  LGKPIQRMEADRIVRLGLSHVPEGREVFPFLSVRENLMMGAYLRKDRDGVAQDLERVYGY 126
           +GK I+ + +  +++ GL+ VPEGR VF  +++ ENL MGA+ R D  G+  D++R++G 
Sbjct: 71  MGKSIKGVPSYNLLKQGLAMVPEGRGVFARMTIVENLQMGAFTRNDESGIKADIDRMFGI 130

Query: 127 FPRLRERLGQPAGQLSAASSRC 148
           FPRL+ER  Q AG +S    + 
Sbjct: 131 FPRLKERANQLAGTMSGGEQQM 152


>DR2118 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 236

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 95/143 (66%)

Query: 7   ILKLSNIESYYGPIMAIRGISLEVPRGRIVTLLGANGAGKTTVLKTISGILDPQKGSIEF 66
           +L++ N+   YG I A+RG+SLEV  G +VTL+GANGAGKTT L+ +S ++ P  G I F
Sbjct: 3   LLEIENLGVNYGAIQAVRGLSLEVQEGEVVTLIGANGAGKTTTLRAVSRMVRPVAGIIRF 62

Query: 67  LGKPIQRMEADRIVRLGLSHVPEGREVFPFLSVRENLMMGAYLRKDRDGVAQDLERVYGY 126
            G+ I R+  D  V++G++  PEGR+V    S+++NL +GAY+R DR G+  DL+R+Y  
Sbjct: 63  GGRDITRIPPDEAVKIGIAQSPEGRQVLARQSIQDNLELGAYVRSDRAGIQADLQRMYDR 122

Query: 127 FPRLRERLGQPAGQLSAASSRCW 149
           FPRL ER  Q AG LS    +  
Sbjct: 123 FPRLGERRTQLAGTLSGGEQQML 145