BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0056.p         (248 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1434 [S] COG3672 Predicted periplasmic protein Pae Pseudomonas...    65   1e-10
BMEII0269 [S] COG3672 Predicted periplasmic protein Bme Brucella...    64   3e-10
mll4550 [S] COG3672 Predicted periplasmic protein Mlo Mesorhizob...    60   6e-09

>PA1434 [S] COG3672 Predicted periplasmic protein Pae Pseudomonas
           aeruginosa
          Length = 237

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query: 111 ARLGEINRAINLAIRPGSDLAAYGEPDVWTTPLATFARGSGDCEDYAIAKLVALRKAGVA 170
           A+L  +N   N ++R   D+  + + D W TP+    +G+ DCEDYAIAK V LR+ GVA
Sbjct: 77  AKLRAVNDFFNRSLRFTDDIEIWQQEDYWATPVEALVKGAADCEDYAIAKYVTLRRLGVA 136

Query: 171 PEDLRIVVLHDLVGGEDHALV 191
            + LRI  +  L   + H ++
Sbjct: 137 SDKLRITYVKALRLNQAHMVL 157


>BMEII0269 [S] COG3672 Predicted periplasmic protein Bme Brucella melitensis
          Length = 184

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 113 LGEINRAINLAIRPGSDLAAYGEPDVWTTPLATFARGSGDCEDYAIAKLVALRKAGVAPE 172
           L  ++ ++N  I+P SD   YG+ D WT P+     G GDCEDY + K   L   G++P 
Sbjct: 60  LQSVSSSVNHRIKPVSDQENYGKRDYWTMPV----NGKGDCEDYVLMKRAQLMARGISPS 115

Query: 173 DLRIVVLHDLVGGEDHALVAARLDGRWLTLDNRR 206
            L I ++    G E H ++A R D     LDN R
Sbjct: 116 QLLITMVQ---GSEAHVVLAVRTDRGDYILDNLR 146


>mll4550 [S] COG3672 Predicted periplasmic protein Mlo Mesorhizobium loti
          Length = 204

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 112 RLGEINRAINLAIRPGSDLAAYGEPDVWTTPLATFARGSGDCEDYAIAKLVALRKAGVAP 171
           +L  ++  +N A++P SD+  YG+ +VW  P     +G GDCEDY + K   L   G++ 
Sbjct: 75  KLAGVSARVNAAVKPMSDMDIYGKDEVWAYP----DKGVGDCEDYVLEKRRRLSHMGISL 130

Query: 172 EDLRIVVLHDLVGGEDHALVAARLDGRWLTLDN 204
            DL I V+     GE H+++  R D     LDN
Sbjct: 131 ADLLITVVRK-TDGEGHSVLTVRTDKGDYVLDN 162