BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0054.p         (209 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc04307_1 [T] COG4252 Predicted transmembrane sensor domain Sme...    94   2e-19

>SMc04307_1 [T] COG4252 Predicted transmembrane sensor domain Sme Sinorhizobium
           meliloti
          Length = 436

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 2/117 (1%)

Query: 20  LVCVALLIGIAALRIVDPAPVQELRVRTFDTFQALQPRQKTARPVTIVDIDEKSLADPRL 79
           ++ +A++  +  LR  DP  ++  R  TFD +Q L PR     PV +VDIDE SL +   
Sbjct: 10  IIGLAIVAALTVLRATDPPLLRLARDLTFDEYQRLAPRSFENVPVRVVDIDEASLKE--F 67

Query: 80  GQWPWPRTRLADIVTNLTRLGAVVIAFDAVFSEPDRLNPDIAADTFSSLDEEMRARL 136
           GQWPWPR R+A +V  L+ +GA  IAFD +FSEPDRL+P       + +D+ +  RL
Sbjct: 68  GQWPWPRDRVAALVDRLSEIGAAAIAFDILFSEPDRLSPRSVMRDVAGVDQALLKRL 124