BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0035.p         (170 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all7648 [QR] COG0500 SAM-dependent methyltransferases Nos Nostoc...   210   9e-55
BS_ydaC [QR] COG0500 SAM-dependent methyltransferases Bsu Bacill...    87   2e-17
CAC0567 [QR] COG0500 SAM-dependent methyltransferases Cac Clostr...    86   4e-17
lin1826 [QR] COG0500 SAM-dependent methyltransferases Lin Lister...    76   4e-14
Rv0329c [QR] COG0500 SAM-dependent methyltransferases Mtu Mycoba...    76   4e-14

>all7648 [QR] COG0500 SAM-dependent methyltransferases Nos Nostoc sp. PCC
           7120
          Length = 191

 Score =  210 bits (535), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 122/167 (73%)

Query: 1   MIMARTNADCGAWVADRLEVGPDDSVLEIGFGPGAVIHRLSILVPAGRIAGIDPSQEMVG 60
           MIMA  N      V D L++ P+D VLE+GFG G  I RLS L  AG IAGID SQEMV 
Sbjct: 25  MIMASMNQAFTYSVIDLLDIQPNDQVLEVGFGSGVGIQRLSSLASAGYIAGIDYSQEMVE 84

Query: 61  QARARNVAAIEDGRVELRLGSVERMPFDADSFDKVLAINSMQVWPDAVAGLREVRRVMKP 120
           QA ARN+A IE G V+LR GSVE +PF+ + FDKVLA+NSMQVWPDA+ GLREVRRVMK 
Sbjct: 85  QATARNMAEIEMGLVDLRQGSVESLPFEDNKFDKVLAVNSMQVWPDALVGLREVRRVMKV 144

Query: 121 SGRIALGFTRYSGQPKEGVAEKLAAAGFSQARLVETDEWFCALATKP 167
            G+IALGFT YSGQ   G+ + L  AGF+QARLVETD  FCALA  P
Sbjct: 145 GGQIALGFTSYSGQSSTGLTQILTTAGFTQARLVETDRDFCALAIAP 191


>BS_ydaC [QR] COG0500 SAM-dependent methyltransferases Bsu Bacillus subtilis
          Length = 181

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 26/183 (14%)

Query: 2   IMARTNADCGAWVADRLEVGPDDSVLEIGFGPGAVIHRLSILVPAGRIAGIDPSQEMVGQ 61
           IMA  N     W  ++L +   DS+LE+GFGPG  + ++        + GID S+ M+  
Sbjct: 6   IMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSEAMLKL 65

Query: 62  ARARNVAAIEDGRVELRLGSVERMPFDADSFDKVLAINSMQVWPDAVAGLREVRRVMKPS 121
           A  R    ++   V L  GS+E  P  A  +DKV+++N+  +W D   G++++ R +KP 
Sbjct: 66  AARR----VKPKGVRLIQGSIETFPLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKPG 121

Query: 122 GRIALGFTRYSGQPKEGVA--EK-----------LAAAGFS----QARLVETDEWFCALA 164
           G+ A+     + QP+E  A  EK             AAGF     Q + ++ +   CA A
Sbjct: 122 GKAAI-----TMQPREADASPEKTKSFGRQMIADFKAAGFEDIDIQFKNIKPELSVCATA 176

Query: 165 TKP 167
            KP
Sbjct: 177 KKP 179


>CAC0567 [QR] COG0500 SAM-dependent methyltransferases Cac Clostridium
           acetobutylicum
          Length = 209

 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 20/184 (10%)

Query: 3   MARTNADCGAWVADRLEVGPDDSVLEIGFGPGAVIHRLSILVPAGRIAGIDPSQEMVGQA 62
           M   + +   W  D++++     +L+IG G G  ++RLS     G + GID S + V  A
Sbjct: 26  MNERHYELTGWGLDKIKIDKAYKMLDIGCGGGRTVNRLSKAAEEGEVYGIDYSSDCVRWA 85

Query: 63  RARNVAAIEDGRVELRLGSVERMPFDADSFDKVLAINSMQVWPDAVAGLREVRRVMKPSG 122
              N   I++GRV +   SVE++PF+ + FD V A+ ++  WP+    ++EV RV+K  G
Sbjct: 86  SEYNKELIKEGRVHISEASVEKLPFEDNKFDVVTAVETIYFWPNVEENIKEVNRVLKKGG 145

Query: 123 RIAL---------------GFTRYSGQP---KEGVAEKLAAAGF--SQARLVETDEWFCA 162
           +  +                F + S       E +   L  AG+   +  + E + W C 
Sbjct: 146 KFIIINEIYDDDKFRERNNEFAKNSNMKIYSPEKLKSLLKNAGYLNVEMEIKEENNWICY 205

Query: 163 LATK 166
           ++ K
Sbjct: 206 VSEK 209


>lin1826 [QR] COG0500 SAM-dependent methyltransferases Lin Listeria innocua
          Length = 221

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 58/118 (49%)

Query: 9   DCGAWVADRLEVGPDDSVLEIGFGPGAVIHRLSILVPAGRIAGIDPSQEMVGQARARNVA 68
           D   W  +  E+     VL++G+G G+ +  L  L     I GID S+E    A A N  
Sbjct: 57  DLSKWTINNTEMAGVTKVLDVGYGGGSNVKNLVNLDQNLTIYGIDISKESYKTASALNKK 116

Query: 69  AIEDGRVELRLGSVERMPFDADSFDKVLAINSMQVWPDAVAGLREVRRVMKPSGRIAL 126
           AI DG+V+L +  V  M +  +SFD V AI +   W +   G  E+ RVM   G + L
Sbjct: 117 AISDGKVKLTVADVADMDYREESFDLVYAIQTHMYWDNLQKGFEEIYRVMSQEGVLIL 174


>Rv0329c [QR] COG0500 SAM-dependent methyltransferases Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 208

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 78/178 (43%), Gaps = 22/178 (12%)

Query: 7   NADCGAWVADRLEVGPDDSVLEIGFGPGAVIHRLSILVPAG-RIAGIDPSQEMVGQARAR 65
            AD      + L  GP + V EIGFGPG     L +L  AG +++G++ S  M+  A   
Sbjct: 34  TADVNRIAVELLAPGPGERVCEIGFGPG---RTLGLLAAAGAQVSGVEVSTTMIAIAAHH 90

Query: 66  NVAAIEDGRVELRLGSVERMPFDADSFDKVLAINSMQVWPDAVAGLREVRRVMKPSGRIA 125
           N  AI  G + L  G    +P    S DKVL +++   WPD  A L ++ R ++P GR+ 
Sbjct: 91  NAKAIAAGLISLYHGDGVTLPVADHSLDKVLGVHNFYFWPDPRASLCDIARALRPGGRLV 150

Query: 126 LGFTR-------------YSGQPKEGVAEKLAAAGFSQARLVETDE-----WFCALAT 165
           L                 Y   P    A  L AAGF    +  + +     WF A AT
Sbjct: 151 LTSISDDQPLAARFDPAIYRVPPTLDTAAWLGAAGFIDVGIKRSADHPATVWFTATAT 208