BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0014.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr3539 [QR] COG0500 SAM-dependent methyltransferases Mlo Mesorh... 269 3e-72 CC0524 [QR] COG0500 SAM-dependent methyltransferases Ccr Cauloba... 208 9e-54 NMB0939 [QR] COG0500 SAM-dependent methyltransferases Nme Neisse... 171 2e-42 NMA1135 [QR] COG0500 SAM-dependent methyltransferases NmA Neisse... 169 4e-42 PA0389 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudom... 159 3e-39 >mlr3539 [QR] COG0500 SAM-dependent methyltransferases Mlo Mesorhizobium loti Length = 205 Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 125/197 (63%), Positives = 157/197 (79%), Gaps = 1/197 (0%) Query: 20 RTDHLLVADMVRPGSRVLDVGCGDGELLQLLE-SRGIDGRGIELSREGVNGCVAKGLAVV 78 R D +VA+++ P SRVLDVG GDG LL+LL+ ++ +DGRG+ELS+ GVN CVA+GL+V+ Sbjct: 8 RVDLEVVANLIPPQSRVLDVGSGDGSLLELLQDTKQVDGRGLELSQRGVNECVARGLSVI 67 Query: 79 QGDADTDLVNYPDDAFDYVILSQTLQATRQPKVVLENLLRIGQRAIVSFPNFGFWKMRLQ 138 QGDAD DL YPD FD+V+LSQTLQATR PK+VL+ LLRIG RAIVSFPNFG W++RL Sbjct: 68 QGDADKDLEFYPDKGFDFVVLSQTLQATRNPKLVLDELLRIGNRAIVSFPNFGHWRVRLS 127 Query: 139 LLIGGHMPRTENLPASWYDTSNIHFCTIKDFVQLCEEINVKMERAVALDLYGRPVPLNLP 198 L + G MP T++LP SWYDT NIHFCTI+DFV LCEE+ +E+A ALD G+ + L++P Sbjct: 128 LFVKGRMPVTQDLPYSWYDTPNIHFCTIRDFVNLCEELGATVEKATALDAAGQKIGLSMP 187 Query: 199 WWVWNMFGEQGVFLLSR 215 WW WN FG+Q VFLL R Sbjct: 188 WWFWNFFGQQAVFLLKR 204 >CC0524 [QR] COG0500 SAM-dependent methyltransferases Ccr Caulobacter vibrioides Length = 221 Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 105/200 (52%), Positives = 137/200 (68%), Gaps = 3/200 (1%) Query: 20 RTDHLLVADMVRPGSRVLDVGCGDGELLQLL-ESRGIDGRGIELSREGVNGCVAKGLAVV 78 R D + +VRPGSRVLDVGCG+G LL LL + +D RG+ELS GV C+A+GL+VV Sbjct: 6 REDFREILRLVRPGSRVLDVGCGEGVLLDLLAHEKQVDARGLELSASGVAACMARGLSVV 65 Query: 79 QGDADTDLVNYPDDAFDYVILSQTLQATRQPKVVLENLLRIGQRAIVSFPNFGFWKMRLQ 138 QGDAD DL ++PD +FDY +LSQTLQATR P+ VL+ LLRI RAIVSFPNFG W++R Sbjct: 66 QGDADLDLDHFPDRSFDYAVLSQTLQATRNPRHVLDELLRIADRAIVSFPNFGHWRVRWS 125 Query: 139 LLIGGHMPRTENLPASWYDTSNIHFCTIKDFVQLCEEINVKMERAVALDLYGRPVPLNLP 198 LL G MP T+ LP W+ T NIH CT+ DF+ L +++N++++ + A G P+N P Sbjct: 126 LLSRGRMPETKALPLPWWSTPNIHLCTLADFMALTQDLNLRVDASAAFAGKGAARPMN-P 184 Query: 199 WWVW-NMFGEQGVFLLSRGG 217 W N E +F+LSR Sbjct: 185 TSAWENWRSETCLFMLSRNS 204 >NMB0939 [QR] COG0500 SAM-dependent methyltransferases Nme Neisseria meningitidis MC58 Length = 193 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 80/167 (47%), Positives = 117/167 (70%), Gaps = 2/167 (1%) Query: 20 RTDHLLVADMVRPGSRVLDVGCGDGELLQ-LLESRGIDGRGIELSREGVNGCVAKGLAVV 78 R D L+ D + GSRVLD+GCGDGELL L+E + G GIE+ V +++G+ V+ Sbjct: 4 RDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYGIEIDTNSVIAAMSRGVNVI 63 Query: 79 QGDADTDLVNYPDDAFDYVILSQTLQATRQPKVVLENLLRIGQRAIVSFPNFGFWKMRLQ 138 Q D + L + D +FD ++LSQT+QA + + +L L+R+ ++AIVSFPNFG+W+ R+Q Sbjct: 64 QADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLMRVAKQAIVSFPNFGYWRNRVQ 123 Query: 139 LLIGGHMPRTENLPASWYDTSNIHFCTIKDFVQLCEEINVK-MERAV 184 + +GGHMP +E +P WYDT NIH+CT+KDF LC + N++ +ERAV Sbjct: 124 IALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAKNNIRILERAV 170 >NMA1135 [QR] COG0500 SAM-dependent methyltransferases NmA Neisseria meningitidis Z2491 Length = 193 Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 79/167 (47%), Positives = 117/167 (70%), Gaps = 2/167 (1%) Query: 20 RTDHLLVADMVRPGSRVLDVGCGDGELLQL-LESRGIDGRGIELSREGVNGCVAKGLAVV 78 R D L+ D + GSRVLD+GCGDGELL +E + G GIE+ + V +++G+ V+ Sbjct: 4 RDDLQLIYDRIPEGSRVLDLGCGDGELLAASVEHKKCSGYGIEIDTDSVIAAMSRGVNVI 63 Query: 79 QGDADTDLVNYPDDAFDYVILSQTLQATRQPKVVLENLLRIGQRAIVSFPNFGFWKMRLQ 138 Q D + L + D +FD ++LSQT+QA + + +L L+R+ ++AIVSFPNFG+W+ R+Q Sbjct: 64 QADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLMRVAKQAIVSFPNFGYWRNRVQ 123 Query: 139 LLIGGHMPRTENLPASWYDTSNIHFCTIKDFVQLCEEINVK-MERAV 184 + +GGHMP +E +P WYDT NIH+CT+KDF LC + N++ +ERAV Sbjct: 124 IALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAKNNIRVLERAV 170 >PA0389 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudomonas aeruginosa Length = 206 Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 78/199 (39%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 20 RTDHLLVADMVRPGSRVLDVGCGDGELLQLL-ESRGIDGRGIELSREGVNGCVAKGLAVV 78 R D ++ + + GSRVLD+GCGDGELL L + + + G G+E+ + + C+ G+ V+ Sbjct: 2 RADLEIIQEWIPAGSRVLDLGCGDGELLAWLRDHKQVSGYGLEIDPDNIARCIENGVNVI 61 Query: 79 QGDADTDLVNYPDDAFDYVILSQTLQATRQPKVVLENLLRIGQRAIVSFPNFGFWKMRLQ 138 + D D L N+ D+FD V+++Q LQA P +LE +LR+G+ I++FPNFG W+ R Sbjct: 62 EQDLDKGLGNFASDSFDVVVMTQALQAVHYPDKILEEMLRVGKTCIITFPNFGHWRCRWY 121 Query: 139 LLIGGHMPRTENLPASWYDTSNIHFCTIKDFVQLCEEINVKMERAVALDLYGRPVPLNLP 198 L G MP +E LP +WY+T NIHFCT +DF +LC ++ +++ +A+D R + Sbjct: 122 LARNGRMPVSEFLPYTWYNTPNIHFCTFQDFERLCRQLRMRVLDRLAVDRDHRHGWASRL 181 Query: 199 WWVWNMFGEQGVFLLSRGG 217 W N+ GE G++ ++ G Sbjct: 182 W--PNLLGEIGIYRVTGPG 198