BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0006.p (373 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1360 [E] COG0765 ABC-type amino acid transport system, permeas... 321 2e-87 ZyhdY [E] COG0765 ABC-type amino acid transport system, permease... 309 7e-84 ECs4143 [E] COG0765 ABC-type amino acid transport system, permea... 309 7e-84 yhdY [E] COG0765 ABC-type amino acid transport system, permease ... 309 8e-84 mlr8153 [E] COG0765 ABC-type amino acid transport system, permea... 302 8e-82 >VC1360 [E] COG0765 ABC-type amino acid transport system, permease component Vch Vibrio cholerae Length = 365 Score = 321 bits (822), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/351 (48%), Positives = 232/351 (66%), Gaps = 11/351 (3%) Query: 27 IVAWLRANLFASVTSSIMTLLLLFVLAKACIGLWQWGIANAIWIVSGNDTSACRALRGVG 86 +V WLR NLF V +SI TL+L ++ + + + W I NA W SG + C G Sbjct: 19 VVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANW--SGTTRNDCTL---EG 73 Query: 87 ACWAVIPEKYRFILFGTYPFSEQWRPAL---AVVIFIALFVVS-SRRSFWRKELFLLWAA 142 ACW I ++ ++G YP +E WRP L + +F+AL + + W +F+ Sbjct: 74 ACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKRGWIWLVFVNIYP 133 Query: 143 SLIAIGCLMWGGFLGMSFVTQDRWGGLPVTLILATFGLAFGFPLGILVALGRRSKXPAIR 202 A+ L++GG G+ V +WGGL VTLI+A G+ P+G+ +ALGRRS P IR Sbjct: 134 FFAAL--LLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALALGRRSDMPIIR 191 Query: 203 SLCVLYVELIRGVPLISLLFMASVMFPLFMPDGVNIDKLLRAQIAFILYAGAYLAEVVRG 262 SLC +Y+E+ RGVPLI++LFMASVM PLF+ G IDKLLRA I ++++ AY+AEV+RG Sbjct: 192 SLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMFSAAYMAEVIRG 251 Query: 263 GLQAVPRGQYEAADALGLSYWEKNALIVLPQAIRHVIPPLVNTFIAFFKDTSLVLIIGIF 322 GLQA+P+GQYEAADALGLSYW+K LI+LPQA++ IP +VNTFI FKDTSLVLIIG+F Sbjct: 252 GLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMF 311 Query: 323 DLLTTAKTAIVDPAWQAFSVEVYVFVGVIYFVFCFAMSRYSRGLEAQRAHG 373 D+L ++A DP W F+ E YVFV +++++FCF MSRYS LE + G Sbjct: 312 DVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLHTG 362 >ZyhdY [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 368 Score = 309 bits (792), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 164/352 (46%), Positives = 233/352 (66%), Gaps = 15/352 (4%) Query: 28 VAWLRANLFASVTSSIMTLLLLFVLAKACIGLWQWGIANAIWIVSGNDTSACRALRGVGA 87 + W+R NLF+S ++S++T+ ++++ + L W A W+ G+ + C GA Sbjct: 22 MVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWV--GSTRADCTK---AGA 76 Query: 88 CWAVIPEKYRFILFGTYPFSEQWRPALAVVIFIALFVVSSRRSFW-----RKELFLLWAA 142 CW I E++ ++G YP ++WR LA++I + VS FW R +W Sbjct: 77 CWVFIHERFGQFMYGLYPHDQRWRINLALLIGL----VSIAPMFWKILPHRGRYIAVWVV 132 Query: 143 SL-IAIGCLMWGGFLGMSFVTQDRWGGLPVTLILATFGLAFGFPLGILVALGRRSKXPAI 201 + + LM+GGF + V +WGGL +TLI+A+ G+A P GIL+ALGRRS P + Sbjct: 133 IYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIV 192 Query: 202 RSLCVLYVELIRGVPLISLLFMASVMFPLFMPDGVNIDKLLRAQIAFILYAGAYLAEVVR 261 R L V+++E RGVPLI++LFM+SVM PLFM +G +IDKL+RA + IL+ AY+AEVVR Sbjct: 193 RILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVR 252 Query: 262 GGLQAVPRGQYEAADALGLSYWEKNALIVLPQAIRHVIPPLVNTFIAFFKDTSLVLIIGI 321 GGLQA+P+GQYEAA++L L YW+ L++LPQA++ VIP LVNT IA FKDTSLV+IIG+ Sbjct: 253 GGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGL 312 Query: 322 FDLLTTAKTAIVDPAWQAFSVEVYVFVGVIYFVFCFAMSRYSRGLEAQRAHG 373 FDL ++ + A VDPAW S E YVF +IY++FCF+MSRYS+ LE + G Sbjct: 313 FDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRFNTG 364 >ECs4143 [E] COG0765 ABC-type amino acid transport system, permease component Ecs Escherichia coli O157:H7 Length = 368 Score = 309 bits (792), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 164/352 (46%), Positives = 233/352 (66%), Gaps = 15/352 (4%) Query: 28 VAWLRANLFASVTSSIMTLLLLFVLAKACIGLWQWGIANAIWIVSGNDTSACRALRGVGA 87 + W+R NLF+S ++S++T+ ++++ + L W A W+ G+ + C GA Sbjct: 22 MVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWV--GSTRADCTK---AGA 76 Query: 88 CWAVIPEKYRFILFGTYPFSEQWRPALAVVIFIALFVVSSRRSFW-----RKELFLLWAA 142 CW I E++ ++G YP ++WR LA++I + VS FW R +W Sbjct: 77 CWVFIHERFGQFMYGLYPHDQRWRINLALLIGL----VSIAPMFWKILPHRGRYIAVWVV 132 Query: 143 SL-IAIGCLMWGGFLGMSFVTQDRWGGLPVTLILATFGLAFGFPLGILVALGRRSKXPAI 201 + + LM+GGF + V +WGGL +TLI+A+ G+A P GIL+ALGRRS P + Sbjct: 133 IYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIV 192 Query: 202 RSLCVLYVELIRGVPLISLLFMASVMFPLFMPDGVNIDKLLRAQIAFILYAGAYLAEVVR 261 R L V+++E RGVPLI++LFM+SVM PLFM +G +IDKL+RA + IL+ AY+AEVVR Sbjct: 193 RILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVR 252 Query: 262 GGLQAVPRGQYEAADALGLSYWEKNALIVLPQAIRHVIPPLVNTFIAFFKDTSLVLIIGI 321 GGLQA+P+GQYEAA++L L YW+ L++LPQA++ VIP LVNT IA FKDTSLV+IIG+ Sbjct: 253 GGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGL 312 Query: 322 FDLLTTAKTAIVDPAWQAFSVEVYVFVGVIYFVFCFAMSRYSRGLEAQRAHG 373 FDL ++ + A VDPAW S E YVF +IY++FCF+MSRYS+ LE + G Sbjct: 313 FDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRFNTG 364 >yhdY [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 368 Score = 309 bits (791), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 165/352 (46%), Positives = 233/352 (66%), Gaps = 15/352 (4%) Query: 28 VAWLRANLFASVTSSIMTLLLLFVLAKACIGLWQWGIANAIWIVSGNDTSACRALRGVGA 87 + W+R NLF+S ++S++T+ ++++ + L W A W+ G+ + C GA Sbjct: 22 MVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWV--GSTRADCTK---AGA 76 Query: 88 CWAVIPEKYRFILFGTYPFSEQWRPALAVVIFIALFVVSSRRSFW-----RKELFLLWAA 142 CW I E++ ++G YP ++WR LA++I + VS FW R WA Sbjct: 77 CWVFIHERFGQFMYGLYPHDQRWRINLALLIGL----VSIAPMFWKILPHRGRYIAAWAV 132 Query: 143 SL-IAIGCLMWGGFLGMSFVTQDRWGGLPVTLILATFGLAFGFPLGILVALGRRSKXPAI 201 + + LM+GGF + V +WGGL +TLI+A+ G+A P GIL+ALGRRS P + Sbjct: 133 IYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIV 192 Query: 202 RSLCVLYVELIRGVPLISLLFMASVMFPLFMPDGVNIDKLLRAQIAFILYAGAYLAEVVR 261 R L V+++E RGVPLI++LFM+SVM PLFM +G +IDKL+RA + IL+ AY+AEVVR Sbjct: 193 RILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVR 252 Query: 262 GGLQAVPRGQYEAADALGLSYWEKNALIVLPQAIRHVIPPLVNTFIAFFKDTSLVLIIGI 321 GGLQA+P+GQYEAA++L L YW+ L++LPQA++ VIP LVNT IA FKDTSLV+IIG+ Sbjct: 253 GGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGL 312 Query: 322 FDLLTTAKTAIVDPAWQAFSVEVYVFVGVIYFVFCFAMSRYSRGLEAQRAHG 373 FDL ++ + A VDPAW S E YVF +IY++FCF+MSRYS+ LE + G Sbjct: 313 FDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTG 364 >mlr8153 [E] COG0765 ABC-type amino acid transport system, permease component Mlo Mesorhizobium loti Length = 385 Score = 302 bits (774), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 168/358 (46%), Positives = 221/358 (61%), Gaps = 14/358 (3%) Query: 28 VAWLRANLFASVTSSIMTLLLLFVLAKACIGLWQWGIANAIWIVSGNDTSACRALRG--- 84 +AW+R NL +V +I+T+L + ++A + W NA+W +G D + C + Sbjct: 27 MAWVRKNLVGTVGDTILTILGIVIVAWILPQVIGWAFINAVW--TGPDRTVCATVAQGGI 84 Query: 85 -----VGACWAVIPEKYRFILFGTYPFSEQWRPALAVVIFIALFVVSSRRSFWRKEL--F 137 GACWA + K+ +FGTYP E+WRP L ++F+AL V RK L Sbjct: 85 QPDGWTGACWAFVNAKFGQFMFGTYPIEERWRPILVAILFVALLVPMLIPRVPRKGLNAI 144 Query: 138 LLWAASLIAIGCLMWGGFLGMSFVTQDRWGGLPVTLILATFGLAFGFPLGILVALGRRSK 197 LL+ I L+ GG G+ V RWGGL VTL L+ G+A PLG ++ALGRRSK Sbjct: 145 LLFLVLPIVSFFLLIGGVFGLPHVETSRWGGLLVTLSLSFVGIAVSLPLGTVLALGRRSK 204 Query: 198 XPAIRSLCVLYVELIRGVPLISLLFMASVMFPLFMPDGVNIDKLLRAQIAFILYAGAYLA 257 P +++LCV+++E +RG+PLI++LF SVM PLF+P GV DK LRA I L+A AY+A Sbjct: 205 MPIVKTLCVVFIETVRGIPLITVLFFVSVMLPLFLPAGVTFDKFLRALIGVSLFAAAYMA 264 Query: 258 EVVRGGLQAVPRGQYEAADALGLSYWEKNALIVLPQAIRHVIPPLVNTFIAFFKDTSLVL 317 EVVRGGLQA+P+GQYE AD+LGL YW+K LIVLPQA+R VIP +VNTFI FKDTSLVL Sbjct: 265 EVVRGGLQAIPKGQYEGADSLGLGYWQKMGLIVLPQALRLVIPGIVNTFIGMFKDTSLVL 324 Query: 318 IIGIFDLLTTAKTAIVDPAWQAFSV--EVYVFVGVIYFVFCFAMSRYSRGLEAQRAHG 373 II +FDLL K D W VF ++++FCF MSRYS E + G Sbjct: 325 IISMFDLLGVVKQNFSDANWATPQTARSGLVFAAFVFWLFCFGMSRYSMYTERRLDTG 382