BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0005.p (618 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZyhdX [E] COG4597 ABC-type amino acid transport system, permease... 321 4e-87 ECs4142 [E] COG4597 ABC-type amino acid transport system, permea... 320 5e-87 VC1361 [E] COG4597 ABC-type amino acid transport system, permeas... 318 3e-86 AGc2907 [E] COG4597 ABC-type amino acid transport system, permea... 291 2e-78 SMc02119 [E] COG4597 ABC-type amino acid transport system, perme... 288 4e-77 >ZyhdX [E] COG4597 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 393 Score = 321 bits (822), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 174/330 (52%), Positives = 231/330 (70%), Gaps = 2/330 (0%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 G I IDY +TY R FIVG++NTL V+ + IV A+V+G +G+ARLS NWLL +L Sbjct: 64 GFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKL 123 Query: 351 AAVYVEVLRDLPLLLQLLFWYV-LMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANG 409 + +Y+E+ R++P LLQ+ FWY +++ LP RQA D +LSNRGL +PS L + Sbjct: 124 STIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFI 183 Query: 410 WTLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVML 469 ++A+V+ +++ + + R Q+ G+ R WP A LII LP L WL GA+ + Sbjct: 184 AFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDV 243 Query: 470 PELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKRS 529 P L+GFNF GG+ L PE AL +AL YTSAFIAEI+R+GIQAVP GQ +AA++LGL Sbjct: 244 PALQGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNP 303 Query: 530 FVLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSI-ANTTLNQTGQAIESI 588 L+ +++PQALRVIIPP+TSQYLN+ KNSSLA A+GY D+VS+ A T LNQTGQAIE+I Sbjct: 304 VTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETI 363 Query: 589 ALIMMVFLTISLGISLFMNWYNARIALVER 618 A+ M V+L ISL ISL MN YN RIA+VER Sbjct: 364 AMTMSVYLIISLTISLLMNIYNRRIAIVER 393 >ECs4142 [E] COG4597 ABC-type amino acid transport system, permease component Ecs Escherichia coli O157:H7 Length = 399 Score = 320 bits (821), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 174/330 (52%), Positives = 231/330 (70%), Gaps = 2/330 (0%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 G I IDY +TY R FIVG++NTL V+ + IV A+V+G +G+ARLS NWLL +L Sbjct: 70 GFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKL 129 Query: 351 AAVYVEVLRDLPLLLQLLFWYV-LMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANG 409 + +Y+E+ R++P LLQ+ FWY +++ LP RQA D +LSNRGL +PS L + Sbjct: 130 STIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFI 189 Query: 410 WTLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVML 469 ++A+V+ +++ + + R Q+ G+ R WP A LII LP L WL GA+ + Sbjct: 190 AFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDV 249 Query: 470 PELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKRS 529 P L+GFNF GG+ L PE AL +AL YTSAFIAEI+R+GIQAVP GQ +AA++LGL Sbjct: 250 PALQGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNP 309 Query: 530 FVLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSI-ANTTLNQTGQAIESI 588 L+ +++PQALRVIIPP+TSQYLN+ KNSSLA A+GY D+VS+ A T LNQTGQAIE+I Sbjct: 310 VTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETI 369 Query: 589 ALIMMVFLTISLGISLFMNWYNARIALVER 618 A+ M V+L ISL ISL MN YN RIA+VER Sbjct: 370 AMTMSVYLIISLTISLLMNIYNRRIAIVER 399 >VC1361 [E] COG4597 ABC-type amino acid transport system, permease component Vch Vibrio cholerae Length = 401 Score = 318 bits (814), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 176/330 (53%), Positives = 237/330 (71%), Gaps = 2/330 (0%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 G I+ S I Y +Y R F+VG++NT V+V+GI+LAT++G L+GIARLSSNWL++RL Sbjct: 72 GFGISQSLIPYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRL 131 Query: 351 AAVYVEVLRDLPLLLQLLFWY-VLMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANG 409 AAVY+E R+LPLLLQ+ FWY V++Q LP+AR++ + YL+ +GL L + Sbjct: 132 AAVYIETFRNLPLLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSI 191 Query: 410 WTLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVML 469 W LVAL+ G+I ++ +Q L G+ P Y L L + P LV +LLG + Sbjct: 192 WVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEY 251 Query: 470 PELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKRS 529 P LRGFNF GG+++ PE ALL+AL YT++FIAEIVRSGI AV GQ++AA +LGL R+ Sbjct: 252 PVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRT 311 Query: 530 FVLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSI-ANTTLNQTGQAIESI 588 L+ +++PQALR+IIPP+TSQYLNLTKNSSLA+A+GY D+VS+ A TTLNQTGQAIE I Sbjct: 312 KTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEII 371 Query: 589 ALIMMVFLTISLGISLFMNWYNARIALVER 618 ++ M+V+LT+SL S MN YN ++ALVER Sbjct: 372 SMTMLVYLTLSLLTSALMNLYNRKVALVER 401 >AGc2907 [E] COG4597 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 400 Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 162/330 (49%), Positives = 226/330 (68%), Gaps = 3/330 (0%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 G I S I YT +TY RA IVG++NT++VA GI+ A++IG +VGIARLS+NWL+++L Sbjct: 72 GFDIGQSLIAYTSDSTYGRALIVGILNTIQVAFFGIIAASIIGFIVGIARLSNNWLISKL 131 Query: 351 AAVYVEVLRDLPLLLQLLFWYV-LMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANG 409 A YVE+ R++P LL + FWY ++ LP AR + + G YL+NRG P PL Sbjct: 132 AQAYVEIFRNIPPLLVIFFWYKGVISVLPQARDSLELPLGSYLNNRGFFFPK-PLWGEGT 190 Query: 410 WTL-VALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVM 468 W + +A +V +++ V R A+Q G+ A LII LPA LG+ + Sbjct: 191 WLIPLAFLVAIVISFFVYRWAKARQEQTGQQFRTGITAALLIIGLPAATFLALGSPLTFD 250 Query: 469 LPELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKR 528 P FN GG +APE+ +L +AL YT++FIAEIVR GI+AV +GQ++AA ALGL+ Sbjct: 251 YPIAGRFNLSGGSVVAPEFMSLFLALSFYTASFIAEIVRGGIKAVAKGQTEAADALGLRS 310 Query: 529 SFVLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSIANTTLNQTGQAIESI 588 S + IV+PQA+R+IIPP+TSQ+LNLTKNSSLAVAVG+ DIVS+ T LNQTGQA+E + Sbjct: 311 STTTRLIVVPQAMRIIIPPLTSQFLNLTKNSSLAVAVGFADIVSVGGTILNQTGQAVEVV 370 Query: 589 ALIMMVFLTISLGISLFMNWYNARIALVER 618 A+ ++++L++SL +L MNW+NA++ALVER Sbjct: 371 AIWLVIYLSLSLLTALVMNWFNAKMALVER 400 >SMc02119 [E] COG4597 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 397 Score = 288 bits (736), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 167/357 (46%), Positives = 234/357 (65%), Gaps = 8/357 (2%) Query: 263 TPDNLKYPEIARMPLSAMNGAHTVFPMPGMPIADSWIDYTPKNTYLRAFIVGVVNTLRVA 322 T DNL+ IA +G V G + S I +T +TY RA +VG +NTL VA Sbjct: 48 TVDNLRRANIA-------SGYDFVRSRAGFDVGQSLISFTSDSTYGRALLVGFINTLLVA 100 Query: 323 VIGIVLATVIGTLVGIARLSSNWLLARLAAVYVEVLRDLPLLLQLLFWYV-LMQGLPAAR 381 + GI+ AT+IG +VGI RLS NW++A+L+ YVEV R++P LL + FWY ++ LP AR Sbjct: 101 ITGIITATIIGFIVGIGRLSHNWIIAKLSLAYVEVFRNIPPLLVIFFWYSGVLSILPQAR 160 Query: 382 QAWKPVDGVYLSNRGLVLPSVPLHEANGWTLVALVVGVIVFIIVRRRLIAQQMLDGKARP 441 A ++LSNRG+ P E +TL+A V+ V + R +Q+ G+ P Sbjct: 161 DALALPFDIFLSNRGVAFPRPIAEEGAEYTLLAFVIAVAASVFFARYARKRQLATGERLP 220 Query: 442 AWPYALGLIIALPALVSWLLGASWSVMLPELRGFNFVGGLTLAPEYFALLIALVTYTSAF 501 LGLII LP + + GA + +P FN GG + PE+ +L +AL YT+AF Sbjct: 221 VLWTVLGLIIGLPLVTFLVTGAPITFDIPVAGKFNLTGGSVVGPEFMSLFLALSFYTAAF 280 Query: 502 IAEIVRSGIQAVPRGQSDAAKALGLKRSFVLQHIVLPQALRVIIPPMTSQYLNLTKNSSL 561 IAEIVR+GI+ V +GQ++AA ALG++ + + +V+PQA+R+IIPP+TSQYLNLTKNSSL Sbjct: 281 IAEIVRAGIRGVSKGQTEAAHALGIRPALTTRLVVVPQAMRIIIPPLTSQYLNLTKNSSL 340 Query: 562 AVAVGYQDIVSIANTTLNQTGQAIESIALIMMVFLTISLGISLFMNWYNARIALVER 618 AVA+GY D+V++ T LNQTGQ+IE +++ ++V+L++SL SLFMNWYNAR+ALVER Sbjct: 341 AVAIGYADLVAVGGTILNQTGQSIEIVSIWLIVYLSLSLATSLFMNWYNARMALVER 397