BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0042.p         (155 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20414 [S] COG5528 Predicted integral membrane protein Sme Sin...   171   7e-43
CC2898 Non COG                                                        170   9e-43

>SMb20414 [S] COG5528 Predicted integral membrane protein Sme Sinorhizobium
           meliloti
          Length = 157

 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 109/152 (71%)

Query: 3   LYFLIKYLHLLGAIVILGTGTGIAFFMLAAHRTQDAAFIARTAATVVIADMIFTLTAVLL 62
           LYF++K+LH++GA V+LGTG GIAFFML AHRT     +A  A  VVIAD +FT TAV+L
Sbjct: 2   LYFVLKFLHIIGASVLLGTGAGIAFFMLLAHRTGRTETVAAVARIVVIADFLFTATAVVL 61

Query: 63  QPVSGGLLMLLSATSIAERWLAVSLALYALAGVFWVPVVFMQIEMRNLAQAAVEKGLPLP 122
           QPV+G  L      S+AE W+ +SL LY + G FW+PVV+MQ+EMR LA+ A + G PLP
Sbjct: 62  QPVTGIALAWNVGYSLAEGWILLSLLLYVVTGAFWLPVVWMQMEMRRLAETASKAGEPLP 121

Query: 123 PRYFALFRRWFLFGIPGFGSVMIILWLMIAKP 154
            RY  LFR WF FG P FG+V+ I WLMI +P
Sbjct: 122 KRYHQLFRLWFAFGFPAFGAVLAIFWLMITRP 153


>CC2898 Non COG
          Length = 156

 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 112/154 (72%)

Query: 1   MTLYFLIKYLHLLGAIVILGTGTGIAFFMLAAHRTQDAAFIARTAATVVIADMIFTLTAV 60
           M LY   K  H++GA V+LGTG GIAFFML AHRT+D A +A TA  VV+AD IFT TAV
Sbjct: 1   MDLYLATKAAHIIGAAVLLGTGAGIAFFMLMAHRTRDPALVAHTARIVVLADFIFTTTAV 60

Query: 61  LLQPVSGGLLMLLSATSIAERWLAVSLALYALAGVFWVPVVFMQIEMRNLAQAAVEKGLP 120
           + QP++GG L +++   +   W+A+SLALY + G+ W+PVV++Q+ +R LA+AAV  G P
Sbjct: 61  IAQPITGGALAMMAGFPLNTGWVAMSLALYVVTGLCWLPVVWIQMRLRRLAEAAVVAGEP 120

Query: 121 LPPRYFALFRRWFLFGIPGFGSVMIILWLMIAKP 154
           LPP Y  LFR WF+ G P F +V+ I+WLM+AKP
Sbjct: 121 LPPAYDRLFRVWFVLGFPAFAAVLAIVWLMVAKP 154