BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0027.p (238 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0853 [TK] COG2197 Response regulator containing a CheY-like... 98 2e-20 SMb21080 [TK] COG2197 Response regulator containing a CheY-like ... 85 2e-16 BMEI1751 [TK] COG2197 Response regulator containing a CheY-like ... 81 2e-15 AGl157 [TK] COG2197 Response regulator containing a CheY-like re... 80 3e-15 AGl3006 [TK] COG2197 Response regulator containing a CheY-like r... 79 8e-15 >BMEII0853 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bme Brucella melitensis Length = 255 Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 33/222 (14%) Query: 1 VIIEQHLLPRTCILNVLRRELADFEILDMATV-QGLDCMSARDVRLVLLSIADKPIVDPS 59 VII+ L R C+ + L D I ++ Q R +VL ++ + + DP+ Sbjct: 38 VIIDSRALDRECLAHGLTNNSVDMTIATFSSYEQWQHQRRNRKAAVVLFNVGGQKVSDPA 97 Query: 60 VEDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVG 119 V + L + C A V +L++ ++ A++ GV+G++PTS+ + V + LRL + G Sbjct: 98 VGNYLKNLVADCAPAPVILLADKEEISQVVRALEHGVKGYIPTSVNVHVCVEALRLAMAG 157 Query: 120 GVYRPLPVAEMNRMPGFDPPDARGLASAYLMNEAARTAIDRSG---------LTPREQHV 170 G + P AS+ L A R A + G T R+ V Sbjct: 158 GTFVP--------------------ASSVL---ALRHATEAGGQRIQPLGGMFTQRQAEV 194 Query: 171 LAELELGLPNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTE 212 + L G NK+IA +LKL ESTVK+HI++IM+K A NRTE Sbjct: 195 VNALRRGKANKIIAYELKLRESTVKVHIRNIMKKLKASNRTE 236 >SMb21080 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sme Sinorhizobium meliloti Length = 274 Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 20/196 (10%) Query: 46 VLLSIADKPIVDPSVEDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLP 105 +LL+I + VD S +++ + + V +LS+ D+ P A++ GVRG++P+S+ Sbjct: 95 ILLNIGGRKAVDTSNAAEISDLVREFDPTPVVLLSDWDELPQILRALECGVRGYIPSSIG 154 Query: 106 IEVVIAGLRLVLVGGVYRPLPVAEMNRM---PGFDPPDARGLASAYLMNEAARTAIDRSG 162 +V + + L GG++ P RM G + P R +A + Sbjct: 155 FDVCVQAVNLARAGGIFVPASSVLTTRMEMVAGGEVP--RPMAGMF-------------- 198 Query: 163 LTPREQHVLAELELGLPNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLRWRGRSL 222 T R++ V+ L G NK+IA +L L ESTVK+HI++IM+K A NRTE + + Sbjct: 199 -TQRQEEVIHALRRGKANKIIAYELNLRESTVKVHIRNIMKKLKATNRTEVAYKLSDMFV 257 Query: 223 PQNRDQDPATAPMPET 238 + D P P + Sbjct: 258 VEGGAGDKPGLPQPRS 273 >BMEI1751 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bme Brucella melitensis Length = 230 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 20/205 (9%) Query: 8 LPRTCILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSVEDDLAFV 67 L R CI N L ++ + + + DV V++ I K + DP ++ + Sbjct: 30 LERECIFNGLVMNGLKLAVICRPFIDHGEVLE--DVAAVMIHIGSKRLADPFFSGEMQAI 87 Query: 68 AEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGGVYRPLPV 127 ++ V L+ ++ AM+ G RG++PTS+ V + + L GG+Y P Sbjct: 88 IDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSVDTRVCVEAIHLATAGGMYVP--- 144 Query: 128 AEMNRMPGFDPPDARGLASAYLMNEAARTAIDRSGLTPREQHVLAELELGLPNKLIAAKL 187 A M P D L LT RE V+ + LG NK+IA +L Sbjct: 145 ASMVTKPAAVDIDEDVLGEL---------------LTAREVEVVHAIRLGRSNKVIAYEL 189 Query: 188 KLSESTVKMHIQHIMRKCAAHNRTE 212 +SE TVK H+ +IM+K A NRTE Sbjct: 190 GMSEGTVKAHVHNIMKKIGAANRTE 214 >AGl157 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 262 Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 15/160 (9%) Query: 57 DPSVEDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLV 116 D S+ + F+A+ P V IL+ + D A GVRG++ +S+ + V + + L Sbjct: 111 DVSLHELREFIADY-PYLPVVILAENRDLRQVMRAFDAGVRGYISSSIGLAVCVGAISLA 169 Query: 117 LVGGVYRPLPVAEMNRMPGFDPPDARGLASAYLMNEAARTAIDRSGLTPREQHVLAELEL 176 L GG + + + D R L E RTA+ T RE V+ L Sbjct: 170 LAGGAF----------VSAENLSDLRQLLVVAEDKERQRTAM----FTQREVDVINALTQ 215 Query: 177 GLPNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLR 216 G PNK+IA +L L ESTVK+HI++IM+K A NRTE + + Sbjct: 216 GKPNKIIAYELNLRESTVKVHIRNIMKKVDAKNRTEVIFK 255 >AGl3006 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 265 Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 16/215 (7%) Query: 12 CILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSVEDDLAFVAEQC 71 C++ L ++ F ++ + + +D VRLVL + + L+ V E+ Sbjct: 44 CLMEALGKKFPTFAVVSIKSSAEIDDDYGNSVRLVL----PYRMSGERLHTVLSEVREKH 99 Query: 72 PNAAVAILSNHDD---EPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGGVYRPLPVA 128 P+A +A++ D EP + R + G LP +L ++V +A + L++ GG + P A Sbjct: 100 PDAPIALVVETIDKFEEPLKRLVGMRIIDGVLPLNLRLDVFMAAVDLLMKGGEH--FPAA 157 Query: 129 EMNRMPGFDPPDARGLA---SAYLMNEAARTAIDRS---GLTPREQHVLAELELGLPNKL 182 + ++ + P G + +A + N A A RS LT RE +L L G NK+ Sbjct: 158 LLGKLTPYSPS-VSGKSVQNNAVIANRADALAASRSEVAALTTREVQILDLLCKGTQNKI 216 Query: 183 IAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLRW 217 IA +L LSE+TVK+H+++I +K NRTEA R+ Sbjct: 217 IADRLHLSENTVKVHVRNIYKKMNVRNRTEAASRF 251