BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0025.p         (264 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene acti...   113   3e-25
mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    79   1e-14
SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    77   3e-14
AGpA717 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    65   2e-10

>sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Syn
           Synechocystis
          Length = 238

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 26  FNNLLRRLNDADYQLIAPHLGLVDAQANDLLYSPGDDVQTVHFPCGPSLVSYMVPNEDGR 85
            N LL  L    Y+ +APHL  V  +   +LY P + ++  +FP   +++S +   EDG 
Sbjct: 9   LNQLLGLLPVEAYKRLAPHLKKVVYKTGTVLYEPNEVMEFAYFP-NTAMISVVSIMEDGS 67

Query: 86  DVETILVGREGAVGGIVSQGFLPAYTRITVKFGGPFARLPISKLDAAKLKSISVRNIFAR 145
             E  L+G EG VG  +  G     +++ V+  G   +L    L     +S  ++ I   
Sbjct: 68  TTEIGLIGNEGMVGLPIILGGKQTTSQVIVQVQGEAWKLSAHILLREFEQSPQLQRILLL 127

Query: 146 YADCMLAQIFQSTACNAIHSIEQRAAKWIISAMERTNGNGMVPLTHEQLSTLLGVGRSYT 205
           Y    L Q+ QS ACN  H IE+R A+W++S  +    +  +PLT E ++ +LGV RS  
Sbjct: 128 YTQARLTQVSQSAACNRQHKIEERLARWLMSVHDCLQVDE-IPLTQEFVANMLGVRRSGV 186

Query: 206 SRVIQNFKAEGVLETRRGAIVIRDADKLRLRSCLCNDAVKDHFEEVL 252
           +    + +  G++  RRG I + D D L+  SC C   V+D +  +L
Sbjct: 187 TIAANSLQQSGMITYRRGKITLLDYDALKKTSCECYQLVQDEYIRLL 233


>mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Mlo
           Mesorhizobium loti
          Length = 243

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 2/203 (0%)

Query: 27  NNLLRRLNDADYQLIAPHLGLVDAQANDLLYSPGDDVQTVHFPCGPSLVSYMVPNEDGRD 86
           N LLR +   D  L+APH+         +L +P   ++ V+F     + S +     G D
Sbjct: 14  NELLRFMPADDLALLAPHMQRCALPVRMMLVTPNIPIEAVYF-IEQGIGSVVASTASGHD 72

Query: 87  VETILVGREGAVGGIVSQGFLPAYTRITVKFGGPFARLPISKLDAAKLKSISVRNIFARY 146
            E   +G EG  G  +  G   A     V+  G   R+  +  +AA   S ++R     +
Sbjct: 73  AEIGFIGFEGMTGSALVMGDDRAAHACFVQLEGEAIRIDAAPFNAALAASPTLRLFLLHF 132

Query: 147 ADCMLAQIFQSTACNAIHSIEQRAAKWIISAMERTNGNGMVPLTHEQLSTLLGVGRSYTS 206
            + +  Q   +   NA   +E+R A+W++   +R  G  +  +THE LS +LGV R   +
Sbjct: 133 VNTLHTQTGCTALVNARLKLEERLARWLLMCDDRVPGESLA-MTHEFLSIMLGVRRPGVT 191

Query: 207 RVIQNFKAEGVLETRRGAIVIRD 229
             +Q  +   ++ +RRG IVIRD
Sbjct: 192 VALQLLEGRALIRSRRGEIVIRD 214


>SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Sme
           Sinorhizobium meliloti
          Length = 238

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 2/207 (0%)

Query: 27  NNLLRRLNDADYQLIAPHLGLVDAQANDLLYSPGDDVQTVHFPCGPSLVSYMVPNEDGRD 86
           N LL  L + DY  IAP L  V      L+ + G  +  V++     + S +    +G  
Sbjct: 11  NQLLDLLPEPDYNQIAPDLDYVKVTRGALIATAGAPIDHVYY-LTSGIGSLVASTPEGNK 69

Query: 87  VETILVGREGAVGGIVSQGFLPAYTRITVKFGGPFARLPISKLDAAKLKSISVRNIFARY 146
            E  + G EG +    + G   +   I ++  G   R+  S       ++ +   +  R 
Sbjct: 70  AEAGIFGSEGYIPTSAAMGVELSVHDIIMQIEGNAYRMEFSAFRKWMDRNRNFARVMIRC 129

Query: 147 ADCMLAQIFQSTACNAIHSIEQRAAKWIISAMERTNGNGMVPLTHEQLSTLLGVGRSYTS 206
            +    Q+  +   NA+H +++R A+W++   +R +G+  +PLTHE +S +L V R   +
Sbjct: 130 IEAFSIQLTYTAISNALHGVDERLARWLLMCHDRVSGDE-IPLTHEFISLMLAVRRPSVT 188

Query: 207 RVIQNFKAEGVLETRRGAIVIRDADKL 233
             +   +  G + + RG I+IR+   L
Sbjct: 189 TSLHVLEGNGFIRSNRGNIIIRNRQAL 215


>AGpA717 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 248

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 1/179 (0%)

Query: 74  LVSYMVPNEDGRDVETILVGREGAVGGIVSQGFLPAYTRITVKFGGPFARLPISKLDAAK 133
           L S +V ++ G+ +ET+LVGREG  G     G     +   +  GG    +   ++  A 
Sbjct: 56  LASTIVRDDGGKSIETVLVGREGITGWPALLGAETTPSETIMCVGGRGFLITTVEIRRAM 115

Query: 134 LKSISVRNIFARYADCMLAQIFQSTACNAIHSIEQRAAKWIISAMERTNGNGMVPLTHEQ 193
            +   +R +   Y +  L Q+      N  + + +R A+W++   +R + + + P+THE 
Sbjct: 116 DEDTRLRELLLGYINICLLQVGHLVLANGQYGLRERLARWLLMCHDRLDTDNL-PITHEF 174

Query: 194 LSTLLGVGRSYTSRVIQNFKAEGVLETRRGAIVIRDADKLRLRSCLCNDAVKDHFEEVL 252
           LST+LGV R   +  +   +    +  RRG + I +   L   + +   A +  +E ++
Sbjct: 175 LSTVLGVRRPGITNELHVLEGIHAIRARRGNVRIINRSILEEVATITYGAPEKEYERLM 233