BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0024.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01953 [T] COG0784 FOG Sme Sinorhizobium meliloti                    78   5e-15
SMa0114 [T] COG0784 FOG Sme Sinorhizobium meliloti                     66   2e-11
AGc1913 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58...    63   1e-10
CC3015 [T] COG0784 FOG Ccr Caulobacter vibrioides                      58   4e-09
AGc3927_2 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C...    58   6e-09

>SMc01953 [T] COG0784 FOG Sme Sinorhizobium meliloti
          Length = 128

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 13  VLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRGEKTF 72
           VLV+ED+ +I+L  E+ ++  G  +V  A + ++A+ELIA+   DFA+LD+ L   + +F
Sbjct: 13  VLVLEDNFLIALDMEEMLVALGVTSVDVATTKSKAMELIADHTYDFAILDINL-GDDTSF 71

Query: 73  AIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEAL 116
           A+A+ L A  + F F +GYG  + LP+ L D PR+ KP S   L
Sbjct: 72  AVADALMARGISFGFTSGYGELLALPSHLRDVPRIDKPFSEGTL 115


>SMa0114 [T] COG0784 FOG Sme Sinorhizobium meliloti
          Length = 120

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 13  VLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRGEKTF 72
           VLVVED+ +I++  EDT+   G     TA+ +  AL++  +   D A++DV L  GE ++
Sbjct: 8   VLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNL-DGEPSY 66

Query: 73  AIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAAL 120
            +A+ L    VPF F TGYG+   L    ++ P LTKP     LEA L
Sbjct: 67  PVADILAERNVPFIFATGYGSK-GLDTRYSNIPLLTKPFLDSELEAVL 113


>AGc1913 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 125

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 9   MPGDVLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRG 68
           +P  V+VVED+ +++L  E  +   G  ++  A ++A+A +++ +   D  LLDV L  G
Sbjct: 2   VPQRVIVVEDEYLVALDVEAVLQSMGVESIIIATTLAQARQVVEQDGADCVLLDVSLSDG 61

Query: 69  EKTFAIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPC-SSEALEAALR 121
            K++  A +L    +PF FV+GYG     P  L   P L KP   +E ++  LR
Sbjct: 62  -KSYDFARQLRMAGIPFGFVSGYGDTTGFPDDLLHSPLLGKPFGETEIMDFVLR 114


>CC3015 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 122

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 13 VLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRGEKTF 72
          VLVVED+ ++S+  ED +   G   V  AA +  AL L      D ALLDV L  G   F
Sbjct: 9  VLVVEDEALVSMLVEDMLSDLGCTIVGPAAEIEEALRLAGSAEIDAALLDVNL-GGRPIF 67

Query: 73 AIAERLDALKVPFAFVTGYG 92
           +A+ L A  VPFAF +GYG
Sbjct: 68 PVADALKARGVPFAFASGYG 87


>AGc3927_2 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 119

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 13  VLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRGEKTF 72
           VL+VED  +I++  E+ +   G + + TA S A A+E +    PD A+LD+ L   + + 
Sbjct: 3   VLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVAILDINL-GSDTSI 61

Query: 73  AIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAAL 120
            +A  L    +PF F TGY     +P      P + KP   +AL A +
Sbjct: 62  PVARELHRRGIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGI 109