BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0011.p (201 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3614 [J] COG1236 Predicted exonuclease of the beta-lactamase f... 166 3e-41 DRA0069 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 140 2e-33 mlr6574 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 130 2e-30 RSc0201 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 122 6e-28 SMa1131 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 115 9e-26 >PA3614 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Pae Pseudomonas aeruginosa Length = 467 Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 126/234 (53%), Gaps = 54/234 (23%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 +ESTYGDR HR D++EEL + GGNV+IP+FA+ R Q++LY L + + RL Sbjct: 212 LESTYGDRDHRDSNDTLEELAAILDQAHRDGGNVLIPSFAVGRTQDLLYYLGRFYQEGRL 271 Query: 61 PPAMQIFLDSP------------------------------------------------M 72 P +FLDSP M Sbjct: 272 P-QQAVFLDSPMAARANGIYLRHSNEFDDRDREYIRGTGTTRLEEWLPVLRVTRSADESM 330 Query: 73 AIS-----XVIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSV 127 AI+ VI+AGSGMCTGGRI HH +HN+WR E +VF G+ A GT+ R I+DGA +V Sbjct: 331 AINRIKSGAVIIAGSGMCTGGRIVHHFKHNLWRPECHVVFPGFQARGTLGRNIVDGASAV 390 Query: 128 RLFGEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQAL 181 R+F + IAV+++I+T+ GFSAHA Q +LL W A +L+HGE M+AL Sbjct: 391 RVFHQRIAVKAQIHTLGGFSAHAGQSQLLDWVGHFAHRPALYLIHGEREKMEAL 444 >DRA0069 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Dra Deinococcus radiodurans Length = 499 Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 52/231 (22%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 +E+TY +R HR ++ E A+ ++ + G ++IP+FA+ERAQ IL+ L++ ++ + Sbjct: 221 IETTYANRTHRGWVETRAEFAQALRDSVRQNGKILIPSFAIERAQTILHTLKEMMDSGEV 280 Query: 61 PPAMQIFLDSPMAI---------------------------------------------- 74 P + +FLDSPMA Sbjct: 281 P-RIPVFLDSPMAARATNEYFEYGDELIPPVREALRNGEDPFRPSTLHTVTTSAESQRLN 339 Query: 75 ----SXVIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLF 130 +IMAG+GM TGGRI+HHL+H++W+ ++++ V Y + ++ +I+ G +V L Sbjct: 340 RYDGPAIIMAGNGMMTGGRIQHHLKHHLWKPSTSLIIVSYQSPSSLGGRIVAGQGTVHLM 399 Query: 131 GEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQAL 181 GED+AVR++++TI GFSAHADQ +LLA+ G +LVHGE M A Sbjct: 400 GEDVAVRAQVHTIGGFSAHADQDDLLAFLDT-AGKPHVWLVHGEVNVMDAF 449 >mlr6574 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Mlo Mesorhizobium loti Length = 535 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 126/257 (49%), Gaps = 63/257 (24%) Query: 2 ESTYGDRRHRSLKDSIEELYGAISGTLAR----GGNVIIPTFALERAQEIL---YVLRQG 54 ESTYGDR + S E+ + + R GG +IIP+FA+ER QE+L Y+L Q Sbjct: 219 ESTYGDRERPDV--SPEQRRSQLGDIVRRAAEAGGPLIIPSFAVERTQELLVDLYLLMQA 276 Query: 55 IERSRLPPAMQIFLDSPMAISX-------------------------------------- 76 E P +F+DSP+A Sbjct: 277 GEVLTAP----VFVDSPLATRASAIFERHANDIEQGDVLRQALNSRELRFTETVEQSKAI 332 Query: 77 -------VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRL 129 V++A SGMC GRIRHHL+ N+WR+ + ++ GY A G++ R ++DGA+ VR+ Sbjct: 333 NRLSGFFVVIAASGMCDAGRIRHHLKANLWRRNATVMMAGYQAQGSLGRILLDGAQRVRI 392 Query: 130 FGEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGC-EATFLVHGEEPAMQALAVHLEG- 187 GE++ V+++I + +S HAD EL+AW +A + FL HGEE + L L G Sbjct: 393 QGEEVEVKARISLFDLYSGHADAGELVAWVKARTPVKQQVFLTHGEEAGLSGLRGRLAGL 452 Query: 188 ---QRVELPRLGDVFDL 201 +V +PRL D F L Sbjct: 453 IPDDKVIIPRLDDAFQL 469 >RSc0201 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Rso Ralstonia solanacearum Length = 452 Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 113/231 (48%), Gaps = 47/231 (20%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 +ESTYGDR H D ++EL + T+ +GG ++IP FA+ R Q +L+ L I R+ Sbjct: 205 VESTYGDRLHPP-GDPLDELERIVHRTIEQGGTLLIPAFAVGRTQALLFCLYTLIRTHRI 263 Query: 61 PPAMQIFLDSPMA--------------------------------------------ISX 76 P + I+LDSPMA Sbjct: 264 P-HVPIYLDSPMAERATEVFARHVEELHIDAADCQAACALAVPVQSPQQSMHLGNDRAPK 322 Query: 77 VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLFGEDIAV 136 +I+A SGM TGGR+ HHL+ K +AI+ G+ AAGT ++ G + +R+ G +IA+ Sbjct: 323 IILAASGMATGGRVLHHLKSFGGGKRNAILMSGFQAAGTRGAALLAGQRQLRVHGREIAI 382 Query: 137 RSKIYTINGFSAHADQQELLAWRRAIE-GCEATFLVHGEEPAMQALAVHLE 186 R+ + I SAHAD EL+AW R E TF+VHGE A AL +E Sbjct: 383 RATVEQIANLSAHADANELMAWLRGFSRAPEQTFIVHGEPAASDALRQRIE 433 >SMa1131 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Sme Sinorhizobium meliloti Length = 531 Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 117/252 (46%), Gaps = 53/252 (21%) Query: 2 ESTYGDRRHRSLKDSIEE--LYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSR 59 ESTYG+ D+ L + G ++IP+FA+ER QE+L L +E Sbjct: 215 ESTYGNIEREEADDAARRHILRSEVLTAAHPNGALLIPSFAVERTQELLTDLVHLMETGA 274 Query: 60 LPPAMQIFLDSPMAISX------------------------------------------- 76 +P I +DSP+A Sbjct: 275 VPKC-PIIIDSPLATRASEIFRRHARELENGDALVRGIESKNVRFTETAEQSKAVDLIRG 333 Query: 77 --VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLFGEDI 134 +++A SGMC GRIRH L++ +WR E+ ++ VGY A GT+ R + +GA VR+ G+DI Sbjct: 334 FHIVIAASGMCEAGRIRHRLKNWLWRDEATVLLVGYQANGTLGRLLEEGATVVRIQGDDI 393 Query: 135 AVRSKIYTINGFSAHADQQELLAWRRAIEGCEA-TFLVHGEEPAMQA----LAVHLEGQR 189 VR++I ++ +S HAD EL W RA + A FLVHGE+ A++ L+ L Sbjct: 394 RVRARIRKLDIYSGHADGSELADWVRARQPISAGVFLVHGEDEALEGIRERLSTFLPQDH 453 Query: 190 VELPRLGDVFDL 201 + PRL F L Sbjct: 454 LIRPRLDSAFRL 465