BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0009.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll6611 [R] COG0517 FOG Mlo Mesorhizobium loti 191 1e-48 SMa0636 [R] COG0517 FOG Sme Sinorhizobium meliloti 147 2e-35 SMa1086 [R] COG0517 FOG Sme Sinorhizobium meliloti 136 5e-32 alr3813 [R] COG0517 FOG Nos Nostoc sp. PCC 7120 85 1e-16 MTH644 [R] COG0517 FOG Mth Methanothermobacter thermautotrophicus 80 3e-15 >mll6611 [R] COG0517 FOG Mlo Mesorhizobium loti Length = 232 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 146/227 (64%), Gaps = 1/227 (0%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M A IM++ V+ P ++I +AA +ML +VSGLPV+ DG LVGI++EGDFL R E+G Sbjct: 1 MQAEAIMSKPVVGIDPSASIAEAAGLMLSKKVSGLPVIRNDGRLVGIVSEGDFLRRGELG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 T RKR+ + F++ PG+ A++YV +GR+V E+M+++ VT + A L VV LM + +VK Sbjct: 61 TERKRSRWLEFLVTPGRAADEYVRANGRRVEEVMSQDVVTASPAASLAKVVELMTRRHVK 120 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLGL-S 179 R+P GK+VGIITRS+LLR + + + A +D+QIR I E+ + W L + Sbjct: 121 RIPATEGGKVVGIITRSDLLRALLGVLPDGAATVIDDEQIRHNIATELAKQKWAGNDLIN 180 Query: 180 VIVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHLCWGDSFS 226 V+V + LSG I + R R AAIVAAENV GV+ V D L D S Sbjct: 181 VMVDKSVVTLSGAIFDERERQAAIVAAENVAGVKAVKDDLFCADPVS 227 >SMa0636 [R] COG0517 FOG Sme Sinorhizobium meliloti Length = 217 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 132/215 (61%), Gaps = 6/215 (2%) Query: 7 MARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIGTGRKRN 66 M KV+ +PD ++ AA +M H VSG+PVVD DG L+G+I+EGD + R+E+ + + + Sbjct: 1 MTTKVVKLSPDDSVRQAAKLMFDHHVSGVPVVDDDGHLLGVISEGDLIRRAELCS--EAS 58 Query: 67 WLMT-FILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVKRLPVV 125 LM + P A ++ +V ++MT PVT+ E+APL V GLM++ +KR+PVV Sbjct: 59 VLMADMAIDPDDRANAFIRRCSWRVGDVMTANPVTIEEEAPLARVAGLMQERGIKRIPVV 118 Query: 126 RDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEI-ERNAWCPLGLSVIVQD 184 RDG+LVGI++R++LL+ + S + A D+ IRR IL + E + L ++V V + Sbjct: 119 RDGELVGIVSRADLLQAIFSTKPDETAA--GDEAIRRSILVRLGENTSLEELDVTVTVTE 176 Query: 185 GIAHLSGVITESRFRNAAIVAAENVPGVREVHDHL 219 GI H G + + R AA + AE+V GVR + +H Sbjct: 177 GIVHFWGQVETAGCRRAARIMAESVHGVRGIVEHF 211 >SMa1086 [R] COG0517 FOG Sme Sinorhizobium meliloti Length = 224 Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 128/220 (58%), Gaps = 8/220 (3%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M A IM ++VLS +PD ++ AA ML++++SGLPV D G LVG+++EGD L R+E+G Sbjct: 1 MLARDIMKKRVLSISPDHSVSHAARAMLENQISGLPVCDDRGRLVGMLSEGDLLRRAELG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 +R+ I G E ++ H +V ++MT+ VTV ED P+ V LM +K Sbjct: 61 LVSRRD-----IAGVRAKPEAFIKGHSWRVGDVMTQPVVTVDEDMPVGRVAELMAAKGIK 115 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLG-LS 179 R+PV+R ++VGII+RS++LR V + +V A D+ +RR +L + + G + Sbjct: 116 RIPVMRAEEMVGIISRSDILRAVTASLPDVIA--NGDEAVRRAVLARLCSDLGLEKGAID 173 Query: 180 VIVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHL 219 V +++G LSG + R AA VAAE + G V + L Sbjct: 174 VTIENGTVSLSGQVESEALREAARVAAETISGAGGVRNRL 213 >alr3813 [R] COG0517 FOG Nos Nostoc sp. PCC 7120 Length = 152 Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 84/145 (57%), Gaps = 6/145 (4%) Query: 6 IMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIGTGRKR 65 +M+ + P++ + +A I+ + R+SGLPVVD DG L+GII+E D + + E G Sbjct: 8 VMSHNPVVVKPETPLQEAIKILAERRISGLPVVDNDGKLLGIISETDLMWQ-ETGVTPPA 66 Query: 66 NWL----MTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVKR 121 + + ++ P + D G+ V E+M++ PVTV+ + + LM NV R Sbjct: 67 YIMFLDSVIYLQNPAVYERDLHKALGQTVGEVMSKNPVTVSPEKSVKQAAQLMHDRNVHR 126 Query: 122 LPVVRD-GKLVGIITRSNLLRTVAS 145 LPV+ D G+++GI+TR +++R +A+ Sbjct: 127 LPVLDDAGQVIGILTRGDIIRAMAT 151 >MTH644 [R] COG0517 FOG Mth Methanothermobacter thermautotrophicus Length = 157 Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 13/146 (8%) Query: 7 MARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIGTGRKRN 66 M V++ S+I DAA ++ ++R+SG PVVD DG LVGII+EGD + E+ + N Sbjct: 8 MQSDVITVKRTSSIHDAARVLRENRISGAPVVDEDGKLVGIISEGDIMRLIEVHSP-SLN 66 Query: 67 WLMTFILG----PGKWAEDY--VLEHGRK-----VSEIMTREPVTVAEDAPLTTVVGLME 115 +M L P + +Y + RK V EIMT + VTV A ++ LME Sbjct: 67 LIMPSPLDLLELPLRMKHEYDEIARGIRKAAVMRVEEIMTPKVVTVPPHASVSDAAELME 126 Query: 116 KNNVKRLPVV-RDGKLVGIITRSNLL 140 ++++KRLPV+ +G+L GIITR +++ Sbjct: 127 RHDIKRLPVIDENGRLAGIITRGDII 152