BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0008.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0565 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    85   4e-17
Rv1767 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    77   9e-15
MT1817 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    77   9e-15
MA2875 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    67   8e-12
MA4072 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    64   7e-11

>PA0565 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Pae Pseudomonas aeruginosa
          Length = 112

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 1   MQKDYADVCKHISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAH 60
           M  ++ +    +    G L K  P+ + A+ A+ +A +  GALDA+T+ELI++A+ +   
Sbjct: 1   MLNNWTEFVPAVKKAFGALGKQHPKMLAAYGALEEA-SAEGALDAKTRELISIAVAITTR 59

Query: 61  CDGCIGFHAEALVKLGVGRKELEETLGLAVYMGGGPSLMYAADALGAYDLFQE 113
           CDGCIG H EA +K G    E+ +TL  A+ +  G + +Y+  AL AYD F++
Sbjct: 60  CDGCIGVHTEAALKAGASEAEIAQTLATAISLNAGAAYVYSLRALEAYDQFKK 112


>Rv1767 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Mtu Mycobacterium tuberculosis
           H37Rv
          Length = 119

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 56/93 (60%)

Query: 19  LRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAHCDGCIGFHAEALVKLGVG 78
           LR  IP+  + F A+  AA  +GAL  + KEL+ALA+ V   CDGC+  HA+A V+ G  
Sbjct: 21  LRHQIPQVYQRFVALGDAALTDGALSRKVKELVALAIAVVQGCDGCVASHAQAAVRAGAT 80

Query: 79  RKELEETLGLAVYMGGGPSLMYAADALGAYDLF 111
            +E  E +G+ + M GGP+ ++ A A  A+  F
Sbjct: 81  AQEAAEAIGVTILMHGGPATIHGARAYAAFCEF 113


>MT1817 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit MtC Mycobacterium tuberculosis
           CDC1551
          Length = 119

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 56/93 (60%)

Query: 19  LRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAHCDGCIGFHAEALVKLGVG 78
           LR  IP+  + F A+  AA  +GAL  + KEL+ALA+ V   CDGC+  HA+A V+ G  
Sbjct: 21  LRHQIPQVYQRFVALGDAALTDGALSRKVKELVALAIAVVQGCDGCVASHAQAAVRAGAT 80

Query: 79  RKELEETLGLAVYMGGGPSLMYAADALGAYDLF 111
            +E  E +G+ + M GGP+ ++ A A  A+  F
Sbjct: 81  AQEAAEAIGVTILMHGGPATIHGARAYAAFCEF 113


>MA2875 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Mac Methanosarcina acetivorans
           str.C2A
          Length = 109

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%)

Query: 23  IPETMRAFSAMAQAATGNGALDARTKELIALALGVAAHCDGCIGFHAEALVKLGVGRKEL 82
           +P  M A   +      +GAL ARTKEL+ + + VA  C+ C+  H    V LG  RKE+
Sbjct: 18  LPGVMNAMMGLHSEVVKDGALSARTKELMMVGIAVALRCEPCLWKHVPEAVNLGANRKEI 77

Query: 83  EETLGLAVYMGGGPSLMYAADAL 105
            E +  A+ MGGGPS+ Y +  +
Sbjct: 78  MEAVSTAIVMGGGPSVAYGSTVV 100


>MA4072 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Mac Methanosarcina acetivorans
           str.C2A
          Length = 109

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query: 11  HISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAHCDGCIGFHAE 70
            ++  + ++   +P  M+    +      +GAL ARTKEL+ + + VA  C+ C+  H  
Sbjct: 6   EMNERMKEMAGELPGVMKTMMGLHSEVVKDGALSARTKELMMVGIAVALRCEPCLWKHVP 65

Query: 71  ALVKLGVGRKELEETLGLAVYMGGGPSLMYAA 102
             V LG  R+E+ E +  A+ MGGGPS+ Y +
Sbjct: 66  EAVNLGATREEILEAVSTAIVMGGGPSVAYGS 97